Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02167 ATGAATGACAACAAGATTGATTGTTTAGGAAGGATTCAACAAAACCATAGATTAAATGGTGATTTTAATTATGAGCTAGGAAATTGTTCTAGTTCTAGTCAATATTTTGATATGAGACATGTTTCCTCAAATATTGGAAATTTTAGTCAACCATTTTCTATGTCATGTGTTGGAGAAATGGAAGATCCATCATGTATAATCCAAAGTCAAAACCAAGGACAAGGAAAATCATCTAGCACTATTATAAGCCGTTTTGAGTCACCAAATTCAGCTTTTTATGCAACTGAAATTTGCATGAATTTTCCACAATATGATTCCCAAGTTGGTAATGATAGTAACCCTTTTTTAATATCTCAATTTTCTAAGGTTAATGATTTGGAATTTCCTTTGTATCAATGTCCAAGGGAAAATATTTTCCTTGATTCAACAAATCAAGCTAACACCAACTTTGAGTTTTCAAATTCAAACCCTTTGCAACCAATGATGAGATCTCAATTAAATAGTGATCAATGTATTAGATCTCCTGAAAATTCCAATAAAATCCTAAGTGGAAATTTTCATTCAGTTGAACAACATAAATTCTTCATTGATGATGCTGCATCAATTAGTATGAGTCCATTAATTCCTTCTAAAGGAAATCAAGATCATAAAGTTTCTTGTGGTTCATATGATATGCCTGTTTCACAGCTGAATTTCTCTTATCAACAAGAGAAACTTTCTCCAACAATTTCAACAGGCAATTTGTCAACTATTTGTGGAAATTACCCTGCTTCTAATGGATCATCAGTGTGTAGTAAAACGAGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGTGTGAATCGGCTTGGAGGCGCCGAGAAGGCAACACCAAAAGCTATATTAAGGTTGATGGAATCAGATGGATTGACTATTTTTCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGAATCAACTCAGGGCAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGTCAAATCTGGCTTGCAAATTAGAGAGGCACTTCAACTGCAACTAGATGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAATTGAGAATTGAGGAACAAGGAAAGCAGTTAAAGATGATGTTTGACCAACAGCAGAAGACAAACACTCAGAATTTGGACAATACAGAAAATAATAATAATAAACCAATTAGTCCTAAAGATATTGAGGTTTCAATTTTGGAAGGGTCTGAAAATTCCTTATTCCCTTCAAAGATAAGTTAG 1308 0.3341 MNDNKIDCLGRIQQNHRLNGDFNYELGNCSSSSQYFDMRHVSSNIGNFSQPFSMSCVGEMEDPSCIIQSQNQGQGKSSSTIISRFESPNSAFYATEICMNFPQYDSQVGNDSNPFLISQFSKVNDLEFPLYQCPRENIFLDSTNQANTNFEFSNSNPLQPMMRSQLNSDQCIRSPENSNKILSGNFHSVEQHKFFIDDAASISMSPLIPSKGNQDHKVSCGSYDMPVSQLNFSYQQEKLSPTISTGNLSTICGNYPASNGSSVCSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPESTQGKSEKRTNVENVHLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNTQNLDNTENNNNKPISPKDIEVSILEGSENSLFPSKIS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02167 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 68 435 IPR044848 GO:0003700
Car04g02167 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 266 321 IPR006447 GO:0003677
Car04g02167 435 Pfam Myb-like DNA-binding domain 270 319 IPR001005 -
Car04g02167 435 Gene3D - 265 324 - -
Car04g02167 435 MobiDBLite consensus disorder prediction 396 414 - -
Car04g02167 435 Pfam MYB-CC type transfactor, LHEQLE motif 349 396 IPR025756 -
Car04g02167 435 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 68 435 - -
Car04g02167 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 265 323 IPR017930 -
Car04g02167 435 Coils Coil 352 372 - -
Car04g02167 435 MobiDBLite consensus disorder prediction 396 415 - -
Car04g02167 435 SUPERFAMILY Homeodomain-like 264 320 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02167 Car-Chr4 29592220 29595138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02167 257 410 G2-like Transcription Factor Family AT4G28610 54.777 1.53e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car04g02167 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02167 - - gmx:102668541 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02167 04 29592220 29595138 Car04g02167 04 29592220 29595138 ECH