Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02162 AAATTGGAGATTATATATCTATCAGCAAAATTGATACAAATGACTTCAGCTTGATCCCCGGTCGACGTTGTGATGAAAGCTACAGTGACGTAGCTACACCAACAAACAATCTATCGCAAAATGAGGATCATCAATCTGAAAATCTTAGGGTTCCCAGTGAGACAGCTAATGAAAGTGTTCCCTATGATTTTTCCGATGAAGAGGAAGATGATGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAAACAACCTTATCTGAGGAAGAAAAAATGGAAAGAGTTGATGCAATTGATCCAAATGACGAGATTGCATTACTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTCGCTAGGTATAAAAAGGACCTGAGTGATGATGGAGATCAGGAAGATCTGTCAGATTATGCTTCTGCTTCATCAGAAGACCATCAGAATTCACCAGTCCATGACAATGCTGAGCAGAAAGATCCTGCTGTTTCTGTGGATGAAGATATCAAGTCGGGCGAGCAACTGGCTACTATACATCCCCAGGCAGAAGAACAAGGGGAAGTACCTTGTGAAAATTCAGAGAAAAGAGAAAGTGAGGATATAATTGCTGATGCCGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCCTTTCTACTCAAGTACTCTCTGCGTGAATATCAGCATATTGGATTGGATTGGCTTGTGACGATGTATGAAAAAAAGCTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGCAAAACTATTATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCCCATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTACTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATCAAAAATTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGGCGGATTCTGTTGACCGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCTCACCAAGAATTTAAGGATTGGTTTAGCAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTTCGTCGATTAAAACGAGATGTAGAAAAGCAACTTCCCATGAAACATGAGCATGTCATATTCTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCCAATGCCAATTTTTTTGGGATGATTGGTATTATCATGCAACTTCGTAAGGTTTGTAACCATCCTGACCTATTTGAGGGTCGTCCAATTGTCAGTTCTTTTGATATGTGTGGGATTGATGCTCAGTTAAGTTCTTCTGTTTGTTCCATCCTTTTGCCTAGCCCCTTTTCAACTGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGACTATAGCATGACTTCTTGGGAGAGTGATGAGGTGCAAGCTATTGAGACCCCTGCAACTTCAATTATGGAACGCACTGATATGGCTAACCTGGAAGTAATTAAGCCTGGACTGAAATGTCTGAAAAAGCAGCAAGGAACAAACATTTTCGAAGAGATTCAAAGGGCACTTTGGGAAGAAAGGATAAGACAGGCAAAGGAACATGCAGCAGCTACTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTCATCAAAATAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTTTCCCCAGTTGAACGATTTCAAAGGATCATTGACGTGGTGGAAAGTTTCATGTTTGCAATCCCTGCTGCTCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAACTGTGTTTCTGCACCCATCTTTCAAGCAGCGATGTTCTGATATTCTGTCACCATTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCTGATAGACGGCTTATACAATTTGACTGTGGAAAATTGCAGGAACTAGCAATCTTGTTGAGGAAATTGAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAAATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAGTTTGTATGGTTATACTTACATGCGCTTAGATGGGTCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATATATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATTGAACTATTTTCAGGTCACAGAACACTTCCAATTAAAAATGCACCGAAGGAGAAAAACCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTGGAAGCTGCATTAAAACATGTTGAAGATGAGGCAGATTATATGGCACTGAAAAAAGTCGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTgaagaggatgagtatgtaaatgaggatgatgaCCCTCCAGAACTAGGTGAATCTGTTTCCAATTTGAATAAAGAGAATGCATTAGTGTTAAATGGAAGTGATCAGATTCTGAAGGAAGATAAACCGCCCTCTGTTGCTGACAGAGAAGATGATGTTGACATGCTGGTAGATGTGAAACAGATGGCAGAAGCTGCAGCTGCAGCTGGACATGCTTTATCAGCCTTTGAGAATGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGAATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAAGTATAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAACGGCATATCGGCAACAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGACCTCGAATATGAAGCTAGACAGAAAGAAGAAGCTGAGGAAGAGAAAATCAGAGCTCAAGCACGCAGTGATTCAAAGCCCAAGCCTAAAAAGAAACCCAAGAAAACGAAGTTCAAATCTCTGAAGAAAGGATCCTTAACCTCTGGTTTGAGAACTGTGAAAGAAGAGCTACAAGCAGAGCCAATGGCCATAGATGATGAGGTTGCCACTAGTCTTGATTTTGTGACTCCAAATTCAAATCTGCATAAAAAACGCAAGAAGTCTAAACTAACAACTGATGGTGAAGAAGAAAAGAGATCTAAGAAGTCCAAAAAGTTCAAGAGGGATCATCTTGACATTTATGATTCAGATTTAGAATCCAACTCTTTAGATATGCAGGATGAACATGCAGAATCAGAGCCATGTAAGAGTCTGGTTGTGTCGGAACAGAAAACAGCTGGCCGTAGTAAGATGGGAGGAAAAATATCAATCACTTCAATGCCTTTGAAACGGATCTTTATGATAAAACCCGAAAAATTGAAGAAGGGAAATATTTGGTCCAAAGATTGTATTCCATCGGCTGATTTTTGGATGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTTATGAGTATGGCCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATAGCATGACTGCTGGCGGGGCATATAGGGGGAGATATCGTCATCCTGCCCATTGCTGTGAGAGGTTCAGAGAATTATTTCAAAAATATGTCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACAATACTGGCTCTGGAAAGGCTTTTAAAGTTACAGAGGATAACATTCGAATGTTATTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTACTACTGCAGAAGCACTTTTATGCATTGCTTTCATCTGCCCGGAAGATGGCATCACATGTTGACCGCAGACAAAATCCATATGCCACTTGCAATGGTCTCTATTTTGATCAGAGTTTCTTCGCTTCAATTGGCCAGCATTCACAAAATCCCCTGAACAAACCATCTGAAAGGATGACGTTTGCTAATTCGGCCCAGAGCAAGAAGTTATTAGCAGCTGCACTGGATGACACGAGAATTAGTAGGTTAGAGAATGACCAAATATTCCTCTCCAGTCAGGGTGATGACACGGCGGTGAGTGAAGATCAGGTGGATATAATAACTCTGGAGTTCCCGGGAGAGGAAAGTGATTCCTTATCCCCATTTCCATCTGTGATAAACTTATCAATAAAAGGGACTGAAGCACCACCATCTTTAAATAAGCACACAAGTGATGATCATCTTACAACTTGTTTTTCTCCTGCTGCTGAGGATCGTTTCAGGGAAGCAACAAGAGCTTGTGAAGAAGACAGTGCTGGATGGGCTTCATCAGCATTCCCAACAAATGATGCAAGGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAGATCTTCCACCTCCGACGTTACTAAGCCTTCTAGGTCAAAGACCAAAAGAGCTTCAGTGGATTCTACTGAAATGCACCGCCATCAGGCTGAGCCATTATTCCAGCCAATGCCGACGCTTCAGGATCTGACAATGGATCTCCCTTCGTCCACTATGGACGAATTTGGAATTAACATGGATAGCAATTTCCCCTTTGATATGAATGGGGAAAGCTCATTGGAAAGGGAAAATTTTGGAGTAGTTCCACATGATTATATAGCTGATTTAATTGCAGACCTTGATAATTATACAAAGTCAGGTCGAAGTGAACTGGTTTTGCAGATTGATTACTCCTTTGAAGTAATGTTGGAAGAGGATTCTAGCAAAAGCCAGCAGAAGGTTTCAGGATGCGAAAGTATATGGAGATGTCAGAGTGCTGTCAATGTTCTTACTGGTAATTCTGTGATGGTTTTGGCTCCAGGTCGAATTTGA 5453 0.411 IGDYISISKIDTNDFSLIPGRRCDESYSDVATPTNNLSQNEDHQSENLRVPSETANESVPYDFSDEEEDDDFLFGTEDKDDETTLSEEEKMERVDAIDPNDEIALLQKESDMPVEELLARYKKDLSDDGDQEDLSDYASASSEDHQNSPVHDNAEQKDPAVSVDEDIKSGEQLATIHPQAEEQGEVPCENSEKRESEDIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIFCRLSKRQRNLYEDFIASSETQATLANANFFGMIGIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDAQLSSSVCSILLPSPFSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPATSIMERTDMANLEVIKPGLKCLKKQQGTNIFEEIQRALWEERIRQAKEHAAATAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIHQNKANPVSYLFPSKLADIVLSPVERFQRIIDVVESFMFAIPAARASPPVCWCSKSETTVFLHPSFKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPIELFSGHRTLPIKNAPKEKNQNSGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYVNEDDDPPELGESVSNLNKENALVLNGSDQILKEDKPPSVADREDDVDMLVDVKQMAEAAAAAGHALSAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEDLEYEARQKEEAEEEKIRAQARSDSKPKPKKKPKKTKFKSLKKGSLTSGLRTVKEELQAEPMAIDDEVATSLDFVTPNSNLHKKRKKSKLTTDGEEEKRSKKSKKFKRDHLDIYDSDLESNSLDMQDEHAESEPCKSLVVSEQKTAGRSKMGGKISITSMPLKRIFMIKPEKLKKGNIWSKDCIPSADFWMPQEDAILCAVVYEYGPNWSFVSEMLYSMTAGGAYRGRYRHPAHCCERFRELFQKYVLFSMDNANHEKINNTGSGKAFKVTEDNIRMLLDVASEQANRELLLQKHFYALLSSARKMASHVDRRQNPYATCNGLYFDQSFFASIGQHSQNPLNKPSERMTFANSAQSKKLLAAALDDTRISRLENDQIFLSSQGDDTAVSEDQVDIITLEFPGEESDSLSPFPSVINLSIKGTEAPPSLNKHTSDDHLTTCFSPAAEDRFREATRACEEDSAGWASSAFPTNDARSRPGSRIQSSGKQRSSTSDVTKPSRSKTKRASVDSTEMHRHQAEPLFQPMPTLQDLTMDLPSSTMDEFGINMDSNFPFDMNGESSLERENFGVVPHDYIADLIADLDNYTKSGRSELVLQIDYSFEVMLEEDSSKSQQKVSGCESIWRCQSAVNVLTGNSVMVLAPGRI 1816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02162 1816 MobiDBLite consensus disorder prediction 28 59 - -
Car04g02162 1816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 456 IPR027417 -
Car04g02162 1816 Gene3D - 203 479 IPR038718 -
Car04g02162 1816 CDD DEXQc_SRCAP 234 456 - -
Car04g02162 1816 CDD SF2_C_SNF 764 899 - -
Car04g02162 1816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 958 IPR027417 -
Car04g02162 1816 Gene3D - 480 549 - -
Car04g02162 1816 Gene3D - 1359 1420 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1670 1688 - -
Car04g02162 1816 Coils Coil 1117 1137 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1179 1199 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 24 100 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 148 163 - -
Car04g02162 1816 PANTHER HELICASE SRCAP 43 1648 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 60 85 - -
Car04g02162 1816 Gene3D - 747 994 IPR027417 -
Car04g02162 1816 SMART helicmild6 805 888 IPR001650 -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1248 1280 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 123 163 - -
Car04g02162 1816 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 411 IPR014001 -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1179 1216 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1637 1669 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1631 1694 - -
Car04g02162 1816 Pfam Helicase conserved C-terminal domain 778 888 IPR001650 -
Car04g02162 1816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 779 929 IPR001650 -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1261 1280 - -
Car04g02162 1816 Coils Coil 1168 1195 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1296 1316 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 176 196 - -
Car04g02162 1816 SMART ultradead3 230 423 IPR014001 -
Car04g02162 1816 MobiDBLite consensus disorder prediction 1200 1214 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 996 1022 - -
Car04g02162 1816 PANTHER HELICASE SRCAP-RELATED 43 1648 - -
Car04g02162 1816 MobiDBLite consensus disorder prediction 86 100 - -
Car04g02162 1816 ProSiteProfiles Myb-like domain profile. 1363 1416 IPR001005 -
Car04g02162 1816 Pfam SNF2-related domain 251 523 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02162 Car-Chr4 29428339 29443176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02162 725 918 RAD5 or RAD16-like Gene Family AT5G43530 30.986 3.66e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g02162 SNF2_N 1.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02162 - - aprc:113871102 2777.66