Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02161 ATGGATGTCCGTAAGCGAGGAAGGCTTGAAGCCACCGTCAACGTTAACGGTTCCTTTAAGAAGAACAAACAAGAAATGGACTTGTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGTTGCCCATTTGGTGAGGGCTGTCACTTTTTGCATTATGTTCCCGGTGGCTATAATGCTGTTGCCCAGATGATGAATCTAAAATCTTCTGCTGCACCTCAATTATCCAGAAATGTTGTCGCACCGCCCCCAGTCGCTAACAATGGTTCTGCACCTTCTGCTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGGGAATGGGAACTTGGCAAACCTTTTGCTCCATCAATCGATGATCACCACCGTCCTATGGCACCTATAACAGTTGGTCGTGTGCCTGGTCGAATTGAGGCTCCTTCAGGTCTGGCTGCTACTACTAGCTTTGGTGTTAATTCCACCGCCAAGATCAGTGTAGAAGCTTCATTGGCTGGAGCTATCATTGGAAAGGGTGGCGTGCACTCAAAGCAGATCTGTCGCCAAACAGGAGTAAAATTTTCAATTCGAGACCATGAATCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTACTTTTAACTCTATCTGCGTCTGCGCCACCTAAATCCAACTCAGGCGTTCCTGGCAGCGGCCCACCCCCACCCGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCTTGTACATTTGGAGAAAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGCAAGCTAGGAATCTAA 906 0.4525 MDVRKRGRLEATVNVNGSFKKNKQEMDLLSSGVGSKSKPCTKFFSIAGCPFGEGCHFLHYVPGGYNAVAQMMNLKSSAAPQLSRNVVAPPPVANNGSAPSAVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSIDDHHRPMAPITVGRVPGRIEAPSGLAATTSFGVNSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSASAPPKSNSGVPGSGPPPPGRNIKTKLCENFAKGSCTFGERCHFAHGASELRKLGI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02161 301 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Car04g02161 301 SUPERFAMILY CCCH zinc finger 267 297 IPR036855 GO:0046872
Car04g02161 301 SMART kh_6 172 242 IPR004087 GO:0003676
Car04g02161 301 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Car04g02161 301 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Car04g02161 301 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Car04g02161 301 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Car04g02161 301 Pfam KH domain 176 238 IPR004088 GO:0003723
Car04g02161 301 Gene3D K Homology domain, type 1 169 266 IPR036612 GO:0003723
Car04g02161 301 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Car04g02161 301 ProSiteProfiles Type-1 KH domain profile. 173 237 - -
Car04g02161 301 CDD KH-I 175 238 - -
Car04g02161 301 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 300 - -
Car04g02161 301 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Car04g02161 301 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Car04g02161 301 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 300 - -
Car04g02161 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 269 IPR036612 GO:0003723
Car04g02161 301 MobiDBLite consensus disorder prediction 248 269 - -
Car04g02161 301 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Car04g02161 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 292 IPR000571 GO:0046872
Car04g02161 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Car04g02161 301 Gene3D - 95 133 - -
Car04g02161 301 Gene3D - 267 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02161 Car-Chr4 29392920 29398337 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g02161 KH_1 1.3e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02161 - - gmx:100817463 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02170 03 67861234 67864231 Car04g02161 04 29392920 29398337 PCT