Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02151 ATGGAGTTAGCTTTGAGCTTAGGAGATACACCAAAACTACCCTTTTCTTTTCTTGACAAACCCACATCAAATCTTGTTGCTTCCGAAGATCCACTACCAAGTAATTTCTTCTCAACACAAGGAAAAACCTCAGAAGAAAAAAGAGGTTCTTCAGATCCACCTATTCAACTTGATCTTCTCCCTTTCACTCCTGTTCTTAGATCTCACCACCCTTCTTCTCAACTTTCAATTCCTTGGCTCACGCAACCATGTGGACCGGTGAGGGAACTAGATGTGAACCGTTTTCCGGCGACGACGGAGGAAGCTGACGATGGCGCGTCGCTGTCATCCCCCAACAGCGAAATATCACCGTTTCAAATGGATTTCAGTATGAGGAATAACAATGGTGATTATGGAGAGAGAAACAAGAGAGAAAACGATGGTGAAGCGGAAAGAAATATAAAAAAAAAATATTTTGACAAGAAAATAAACGATGATGATGAAGAAGAAAATGGGTCCACTCGGAAGAAACTCAGACTCTCTAAAGACCAATCAGCTTTTCTTGAAGAAAGTTTCAAGGAACACACCACTCTTAATCCCAAGCAAAAACTTGCATTAGCAAAACAATTGAATCTTCGACCACGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAATATTTGAAGAGATGTTGTGAAACATTAACAGAAGAAAATAGAAGGTTACAAAAGGAACTTCAAGAGCTTAGAGCATTGAAAACTTCTCAGCCATTTTACATGCAACTTCCAGCTACAACTCTCACTATGTGTCCCTCTTGTGAACGTGTGGCTACTAACTCTTGCAACAACAACACCAGGCCCAAAATATTGCCGTTCTCTAATGTTCAAGCCCAATCACAGCAGGCCCAAGCCCATCAGATTTCTTCTTGA 945 0.4095 MELALSLGDTPKLPFSFLDKPTSNLVASEDPLPSNFFSTQGKTSEEKRGSSDPPIQLDLLPFTPVLRSHHPSSQLSIPWLTQPCGPVRELDVNRFPATTEEADDGASLSSPNSEISPFQMDFSMRNNNGDYGERNKRENDGEAERNIKKKYFDKKINDDDEEENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSCNNNTRPKILPFSNVQAQSQQAQAHQISS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02151 314 Coils Coil 230 260 - -
Car04g02151 314 SMART halz 224 267 IPR003106 GO:0006355|GO:0043565
Car04g02151 314 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 310 - -
Car04g02151 314 Gene3D - 172 222 - -
Car04g02151 314 PANTHER - 2 310 - -
Car04g02151 314 MobiDBLite consensus disorder prediction 99 171 - -
Car04g02151 314 MobiDBLite consensus disorder prediction 24 58 - -
Car04g02151 314 CDD bZIP 217 256 - -
Car04g02151 314 Pfam HD-ZIP protein N terminus 87 116 IPR006712 GO:0005634
Car04g02151 314 Pfam Homeodomain 168 222 IPR001356 GO:0003677
Car04g02151 314 ProSiteProfiles 'Homeobox' domain profile. 164 224 IPR001356 GO:0003677
Car04g02151 314 MobiDBLite consensus disorder prediction 103 129 - -
Car04g02151 314 CDD homeodomain 168 225 IPR001356 GO:0003677
Car04g02151 314 ProSitePatterns 'Homeobox' domain signature. 199 222 IPR017970 GO:0000981|GO:0006355
Car04g02151 314 Pfam Homeobox associated leucine zipper 224 258 IPR003106 GO:0006355|GO:0043565
Car04g02151 314 SMART HOX_1 166 228 IPR001356 GO:0003677
Car04g02151 314 MobiDBLite consensus disorder prediction 130 171 - -
Car04g02151 314 SUPERFAMILY Homeodomain-like 165 233 IPR009057 -
Car04g02151 314 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02151 Car-Chr4 28909401 28911593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02151 54 303 Homeobox Transcription Factor Family AT5G47370 52.222 1.57e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car04g02151 Homeodomain 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02151 K09338 - gmx:100779138 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02186 03 67969592 67971313 Car04g02151 04 28909401 28911593 PCT