Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02146 ATGGATCTGGGAGGCAGTTCCTTCAAAGAAGTTCTTGAAGCTCAGCTGATATTTTCAGATTATGAGACAGCTAAGTCTAAATCTGAGGCCAATTGTAATGGTACATTCACAAAGTCAAGGACTTGTTCGGATGGAAAGAATGGAAATAGTTCAAAGAATGGTGTCTATGACCTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGTGCCCAAACGGCCACACATTATGTTCGAATTGCAAGATTGCGGTGCATAACCGTTGCCCAACGTGCCACCGTGATCTTGGGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCGGAATCAATGGAGCTTCCTTGCAGATATCAAAATCTAGGCTGTCATGATATATTCCCATACAACACTAAGCTAAAGCATGAGCAAAATTGTCGATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGCTCTATGATGTGTGACATTCCAACTCTTATGGCCCATCTCAAGGATGATCACAAGGTCGACGTACATGACGGATTCACCTTTAACCATCGTTATGTTAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATTGTTTTGGAAGGCATTTCTGCTTGCACTTCGAGGCGTTTCTGCTTGGCACAGCTCCAGTTTATATGGCGTTTTTACGATTCTTGGGCGATGAGAAAGATGCGAAGAAATTCAGGTATAGCTTAGAGGTTGGTGGAAATAGCCGCAAACTTATATGGCAAGGAATTCCGAGGAGCATTCGCGAGAGTCATAGAAAAGTTCGCGACAGTCAAGATGGACTTATCATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGAGATAAAAAACAATTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGAATGA 930 0.4204 MDLGGSSFKEVLEAQLIFSDYETAKSKSEANCNGTFTKSRTCSDGKNGNSSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIAVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFPYNTKLKHEQNCRFRPYSCPYAGSECSMMCDIPTLMAHLKDDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFLLGTAPVYMAFLRFLGDEKDAKKFRYSLEVGGNSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKKQLKLRITGRIWKEE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02146 309 SUPERFAMILY RING/U-box 55 101 - -
Car04g02146 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 5 309 - -
Car04g02146 309 SUPERFAMILY TRAF domain-like 117 305 - -
Car04g02146 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 309 - -
Car04g02146 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Car04g02146 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car04g02146 309 CDD RING-HC_SIAHs 59 96 - -
Car04g02146 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Car04g02146 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Car04g02146 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Car04g02146 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02146 Car-Chr4 28732246 28735639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02146 1 309 C3H Transcription Factor Family AT2G41980 77.346 6.34e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02146 K04506 - gmx:100813966 533.872