Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02133 ATGTCTGCAACTATGAGAACAAGTTCATGGGCAGATTCTGCTGATAATAATGCAGCTATTGGTTCTGGTGTTTCCTCCAATACCAATGCCTCAGCTGTGGGTCGCCCTGTCAAGCCAGCTTATGTTCCTCCACATCTTCGTAATCGGTCAATGGCTTCTTTGGCCGAGCCTCCTTCTTTGGTGACTAATAATGTTAATGAAAGGGGTCCGGCGAATTGGGGTGGTTCATTGAACTTCAAGCCTGATCTTGGTGCTGGTAGACAAGGATATGGTTCTGGTGGTGGGTTCAACAGTAGAGGAGGAGCTGGGGCGGGGAGGGAGCGTGGGGGAAGACGTGAGGCTAATCCTTTTGAGAATGATGAGGTTGATGAATCTTTTAGTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCTCCTCCCGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAACATACAGAGATGCAAGTATGTGAAACCGACCCCAGTTCAGAGGTATGCCATACCAATTTCTCTTTCAGGGAGAGATTTGATGGCTTGTGCTCAGACGGGGTCAGGAAAGACTGCCGCATTTTGCTTTCCTATTATAAGTGGAATTCTCAGGGAGCAGTATGCTCAAAGACCACGCGTGGCACGAACTGCTTATCCTCTCGCACTTATCCTGTCACCTACACGGGAGCTTTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTGCGGGAGCTCGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGAAGATTAGTGGATTTGCTTGAGAGGGCAAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCCCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCTTCAGATTTTCTTTCGAGTTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGACTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGAGTGAATGGCAAGCAAGGTTTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCCGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACAAGCATTAAGATCGTTCAAGACTGGAAACACTCCAATTCTAGTGGCCACGGATGTTGCAGCACGTGGTCTTGATATTCCGCGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGAGGGTAATTTGTCCATGGCTAAACCATTGGCTGATCTGATGCAAGAAGCTAATCAAGAAGTACCTGCCTGGCTCACCCGTTATGCAGCAAGGGCTTCTTATGGTGGCGGCAATAGAAATAAGCGGACAGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATTCAATAAAGGAACTGATTACTACGGTGGAACTGGTGGTGGTTACGGTGTTCCTACCAGTTATGGCGGAGGGTATGGTCAAGGTGTGACTAGTGCTTGGGATTAG 1839 0.4649 MSATMRTSSWADSADNNAAIGSGVSSNTNASAVGRPVKPAYVPPHLRNRSMASLAEPPSLVTNNVNERGPANWGGSLNFKPDLGAGRQGYGSGGGFNSRGGAGAGRERGGRREANPFENDEVDESFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLDSDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLSMAKPLADLMQEANQEVPAWLTRYAARASYGGGNRNKRTGGARFGGRDVRKESSFNKGTDYYGGTGGGYGVPTSYGGGYGQGVTSAWD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02133 612 MobiDBLite consensus disorder prediction 105 119 - -
Car04g02133 612 CDD DEADc_DDX3_DDX4 157 377 IPR044763 GO:0003724|GO:0005524
Car04g02133 612 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 51 583 - -
Car04g02133 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 527 IPR027417 -
Car04g02133 612 Pfam DEAD/DEAH box helicase 180 360 IPR011545 GO:0003676|GO:0005524
Car04g02133 612 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 583 - -
Car04g02133 612 Gene3D - 112 373 IPR027417 -
Car04g02133 612 MobiDBLite consensus disorder prediction 1 33 - -
Car04g02133 612 CDD SF2_C_DEAD 383 519 - -
Car04g02133 612 Gene3D - 374 554 IPR027417 -
Car04g02133 612 SMART helicmild6 429 510 IPR001650 -
Car04g02133 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 371 IPR014001 -
Car04g02133 612 SMART ultradead3 175 386 IPR014001 -
Car04g02133 612 MobiDBLite consensus disorder prediction 84 129 - -
Car04g02133 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Car04g02133 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 549 IPR001650 -
Car04g02133 612 MobiDBLite consensus disorder prediction 1 44 - -
Car04g02133 612 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02133 Car-Chr4 28103614 28109670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02133 154 542 Eukaryotic Initiation Factors Gene Family AT3G19760 30.077 7.26e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02133 K11594 - gmx:100800039 953.74