Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02129 ATGAGGGGAAGAAGCTACAGTTACAGTCCGTCGCCTCCAAGGCGTTACGGTCGAAGCAGACGCAGTCCTAGTCCTAGGGGACGTTACGGAGGCCGTGGTAGGGATTTACCAACAAGTCTTCTTGTTCGGAACCTTCACAAAGATTGCAGGCCAGATGATCTGCATGGTCCATTTAGCCAGTTTGGTCCTCTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAGCCGAGGGGATTTGGATTTGTTCAGTATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGACGATCTCCTCGTCGTCGTTCTCGCTCACCACACTATGCACACACCTATTCTCCTAGTCCAGACTATTCACCTTCTCCAGGACGAAGGCAATATTCCAGATATTCCAGGTCAATCTCACCGAGAGATGGAAGGTATAGGAGGGAATCATACTCTAGATCCCCTTATAGTAGATCGCCTTATGCATCAAGAAGCCCCAGTCGAGGTAGGAGTTACAGCAGGAGCATTAGCCGTAGTCCAGGGTACTCTAGGTGA 660 0.4818 MRGRSYSYSPSPPRRYGRSRRSPSPRGRYGGRGRDLPTSLLVRNLHKDCRPDDLHGPFSQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPHYAHTYSPSPDYSPSPGRRQYSRYSRSISPRDGRYRRESYSRSPYSRSPYASRSPSRGRSYSRSISRSPGYSR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02129 219 MobiDBLite consensus disorder prediction 118 135 - -
Car04g02129 219 MobiDBLite consensus disorder prediction 1 36 - -
Car04g02129 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Car04g02129 219 SUPERFAMILY RNA-binding domain, RBD 38 144 IPR035979 GO:0003676
Car04g02129 219 MobiDBLite consensus disorder prediction 118 219 - -
Car04g02129 219 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 214 - -
Car04g02129 219 MobiDBLite consensus disorder prediction 148 173 - -
Car04g02129 219 MobiDBLite consensus disorder prediction 188 219 - -
Car04g02129 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Car04g02129 219 SMART rrm1_1 39 112 IPR000504 GO:0003723
Car04g02129 219 Gene3D - 34 151 IPR012677 -
Car04g02129 219 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02129 Car-Chr4 28004977 28008133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02129 33 111 Eukaryotic Initiation Factors Gene Family AT3G16380 36.709 6.77e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02129 K12900 - qsu:111994466 218.779