Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02127 ATGGAGGCACCTACGGTCGATGTGGACCTTTTGCCGAAGAAGATTGAAAATGAGAAAGAGAGAGGTCCAATGTTCCATTGCGATTTGCATGATACAGAAGTAGTTCACAAGCTGGCACAGATGTTCTTGCCAGGTTTAGCTTCTGCCTGTGTTGATAACACAACTGGAGATCCCTTCAATACTCCTGGTTCAGTTGCAGTTGATTTGAAGAGCGAAATGATAGATTTCGTTACACAGAGAAGTGAATCGTTTGTTGCCGAGTCTGTTATCTTAGATAATGGTGCTGATGGTGAAGTGTCGGATCATCCTTTTGATATCATTTCTTGTTTTGTTGACGACTTTGTAACTTCGAAGAGGAATTTGTTGAGTCAGGTTTCGGGATGGTTGCTAAGCGATAAGAGGGAAGACAAGATTGATGATTTTGTTCAGGAGATGGAAATGAATGGTTTTTGGTTGCTAGACAGAAGAGAAAAAGTTGCAGAAACTTTGCTTAAGAATGTTGACTTTAAGAACTTGTTTCATTGCAGCATGAGTTTTACTAATGCAGAAGATCTTGCAAACCATGTCAATAACTGCATCTTCAAACCTGTGTTCTGCGATAACGAGGGATGCAATGCAAGGTTTAGCGCAGGTCATTTGAAGGAGCATGAATCGGATTGTCCTTTTAAGATAATTCCGTGTGAGCAGAAGTGTACAGATAGCATTATGAGACGTGAGATGGATAGGCACTGCATAACTGTCTGTCCGATGAAGCTTGTGAATTGCCCTTTCTATGCGGTTGGTTGTCGATCGGCTATTGCTCAATGTATGGTTGGAAAACATTGCTCAGATGATCTTCATTCTCACTTGTTGCACATGCTTAAAGGGATCCACAAGGATGCATCCGGTGGAGATCTTAATCGACGAGTAGAGCAAATTGTACAGGCATCATCAAGCAATAGATTAGCAGAAGCTCGAGATGTGAGATCTCTAAAAGTGATTGTCAAAGATCTTGAAGCTAAGCTCGGACCTTTGGAAGTTAGTGCCATCGAGAAAACTAGTGCAGAAACAGTTGCCAAGAATGAAGATAGTGAAGACATTGGCACCAAAACAAATGGAGGTGCACAAGGTTTAACTTCATCAGATAAAACTGAAGTGAGTGCTATATTTAATAATGAAGAAGATAAGTGA 1170 0.4094 MEAPTVDVDLLPKKIENEKERGPMFHCDLHDTEVVHKLAQMFLPGLASACVDNTTGDPFNTPGSVAVDLKSEMIDFVTQRSESFVAESVILDNGADGEVSDHPFDIISCFVDDFVTSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWLLDRREKVAETLLKNVDFKNLFHCSMSFTNAEDLANHVNNCIFKPVFCDNEGCNARFSAGHLKEHESDCPFKIIPCEQKCTDSIMRREMDRHCITVCPMKLVNCPFYAVGCRSAIAQCMVGKHCSDDLHSHLLHMLKGIHKDASGGDLNRRVEQIVQASSSNRLAEARDVRSLKVIVKDLEAKLGPLEVSAIEKTSAETVAKNEDSEDIGTKTNGGAQGLTSSDKTEVSAIFNNEEDK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02127 389 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Car04g02127 389 SUPERFAMILY TRAF domain-like 175 225 - -
Car04g02127 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 280 IPR013083 -
Car04g02127 389 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 350 - -
Car04g02127 389 MobiDBLite consensus disorder prediction 346 389 - -
Car04g02127 389 MobiDBLite consensus disorder prediction 361 380 - -
Car04g02127 389 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 350 IPR043211 -
Car04g02127 389 SUPERFAMILY TRAF domain-like 202 282 - -
Car04g02127 389 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02127 Car-Chr4 27953003 27970783 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02127 zf-TRAF 7.4e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02127 - - gsj:114391789 585.104