Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02104 ATGGGAAACAACTGCATTGGATCGAGAACTTCTTCAAAAGATGGATCATCTCCCTCTACACATCGAATTCCATTTTGTTGGCCACGTGGATCAAAGAAAGATACTTCTTATGCACACAAAACCAATCCAAAAGAAACTGTTCAAAACAAGCCACCAAATGTAGTGAAAATCGAAATGGAAGATGCGAAATCACCTCAACAAAAACCACCAAAAGTGAATGAAGTTGTTGTAGCTGCCAGTGCTACACCTGCAAAACCAAAGAGACCACACAATGTGAAGAAACTAGCAAGTGCAGGACTCAAAACAGATTCAGTTTTGCAGCGAAAAACAATTAGTCTTAAGGAGTTTTATACTTTGGGAGCAAAACTTGGACAAGGACAATTTGGAACTACGTTTCTTTGTTCAATCATGAAGAGGAAGTTGTTGACAGACGAGGATGTCGAAGATGTTAGGAGGGAGATTCAGATTATGCATCACTTAGCCGGGAGTTCGAATGTGATTTCAATTAAGGAAGCTTCTGAGGACGCTGTTGCAGTTCATGTTATTATGGAGTTGTGTTCTGGGGGTGAACTTTTCGATAGGATTGTGGAAAGAGGACACTACACAGAGCGAAAAGCGGCTAAACTTGCAAGAACTATAGTTGGTGTTATTCAATCATGTCACTCTCTTGGAGTAATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAGCAGGACGTAATTGTCATGACATTTGTTGCTGACATTCTAACTCATTATTTTACAGGTGACATTTTCAATGATGTAGTAGGAAGTCCTTATTACGTTGCTCCCGAAGTTCTACGCAAGCGATATGGCCCAGAAGCAGACGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGAGAATCGGAGCAAGAGATATTTGAGGCCATTTTGCATAGTGATCTTGATTTCTCATCAGATCCATGGCCTAGTATATCTGAAAGTGCAAAAGATCTGGTGAAGAAGATGCTCGTCAGAGACCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGTCACCCTTGGATCCAGGTTGACGGAGCAGCTCCAGACAAGCCTCTCGATTCCGCAGTTTTGAGTCGCATGAAGCAGTTTACTGCAACGAACAAGCTCAAGAAAATGGCTCTCAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTTAAGATGATCGACACAGACAATAGTGGTCACATTACTTTTGAAGAACTCAAGGTTGGACTCAAAAACTTTGGAGCCAATCTCAATGAATCTGAAATTTACGATCTAATGCAAGCCGCGGATGTTGATAATAGTGGCACAATTGACTATGGAGAGTTCATAGCTGCAACATTGCATTTAAACAAAGTTGATAGGGAAGATCATTTAGTTGCAGCTTTCGCATATTTTGATAAAGATGGAAGTGGTTATATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCCTAGGTGATGTACCCTTGGAAGAAATGATTCGAGAAGCCGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTAGCTATGATGCAAAGAGGGAATGCAGAAATGGGAAAGAAGGGTCGAAAGGGTAGCACTAGTTTTAGGGTTGGTTTTAGGGAGGCATTACCTGTGTGTTAA 1710 0.4094 MGNNCIGSRTSSKDGSSPSTHRIPFCWPRGSKKDTSYAHKTNPKETVQNKPPNVVKIEMEDAKSPQQKPPKVNEVVVAASATPAKPKRPHNVKKLASAGLKTDSVLQRKTISLKEFYTLGAKLGQGQFGTTFLCSIMKRKLLTDEDVEDVRREIQIMHHLAGSSNVISIKEASEDAVAVHVIMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHSLGVMHRDLKPENFLFVNQQDVIVMTFVADILTHYFTGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFSSDPWPSISESAKDLVKKMLVRDPSKRLSAFDVLRHPWIQVDGAAPDKPLDSAVLSRMKQFTATNKLKKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGHITFEELKVGLKNFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFAYFDKDGSGYITQDELQKACEEFGLGDVPLEEMIREADQDNDGRIDYNEFVAMMQRGNAEMGKKGRKGSTSFRVGFREALPVC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02104 569 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Car04g02104 569 SMART serkin_6 117 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02104 569 MobiDBLite consensus disorder prediction 1 52 - -
Car04g02104 569 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 553 - -
Car04g02104 569 PANTHER CALCIUM-DEPENDENT KINASE 39 553 - -
Car04g02104 569 SUPERFAMILY Protein kinase-like (PK-like) 107 387 IPR011009 -
Car04g02104 569 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Car04g02104 569 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Car04g02104 569 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Car04g02104 569 Gene3D Phosphorylase Kinase; domain 1 119 190 - -
Car04g02104 569 SMART efh_1 445 473 IPR002048 GO:0005509
Car04g02104 569 SMART efh_1 481 509 IPR002048 GO:0005509
Car04g02104 569 SMART efh_1 409 437 IPR002048 GO:0005509
Car04g02104 569 SMART efh_1 515 543 IPR002048 GO:0005509
Car04g02104 569 CDD STKc_CAMK 116 361 - -
Car04g02104 569 CDD EFh 481 541 IPR002048 GO:0005509
Car04g02104 569 Pfam EF-hand domain pair 410 470 IPR002048 GO:0005509
Car04g02104 569 Pfam EF-hand domain pair 482 541 IPR002048 GO:0005509
Car04g02104 569 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Car04g02104 569 Gene3D Transferase(Phosphotransferase) domain 1 191 369 - -
Car04g02104 569 ProSiteProfiles Protein kinase domain profile. 117 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02104 569 Gene3D - 370 545 - -
Car04g02104 569 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Car04g02104 569 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Car04g02104 569 SUPERFAMILY EF-hand 401 542 IPR011992 -
Car04g02104 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Car04g02104 569 MobiDBLite consensus disorder prediction 1 19 - -
Car04g02104 569 Pfam Protein kinase domain 117 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02104 569 ProSiteProfiles EF-hand calcium-binding domain profile. 516 546 IPR002048 GO:0005509
Car04g02104 569 CDD EFh 410 469 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02104 Car-Chr4 27279686 27283400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02104 39 560 EF-hand Containing Proteins AT3G10660 68.498 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car04g02104 Pkinase 3.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02104 K13412 - gmx:100783079 927.161