Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02093 ATGGCTATGCAAAATGTTTATCTTAGAGAACATGAAGGAACTTTCCACAATTCTGTGGGACAGTATTCATCTGTGAATTCAGCTCCATGGTGGAATAATGCCTTTGGATCATCTCAATCTGTTTATGGGGGAGATCAGTCTTGTGGACAAATGAAACCCTTTTCATTGGAGCTTTCTAACTACATAGATCAACTTGGTCCTAGTAAGCACTTAGGGAGAGGTGTTGAACAATTGTTGGATAAAGGACATACAAACCAATTTACCATCTTTCCAGATGACTGTAAGATGTTAGGTGATGCACAAAATCATCAAGCAACCTTATCACTTCAGTCATCGTTTGCTGTTACTGAGCCGCATAATCGTTTCGAGCTAGGATTTAATCAATCTATGATATGCGCGAAATATCCTTATATGGATCAATTTTATGGACTCTTCTCAACTTATGGACCACAAATTTCGGGACGTATAATGCTTCCGCTTAGCTTGGCGTCGGACGATGGACCGACTTACGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCCGACAATCCCGTGCCAAAGCTGTGCTTCAGAATAAATTGATTAAACGTAGCAAGCCATATATGCATGAATCGCGCCATCTACATGCAATGCGGCGACCAAGAGGATGTGGTGGCCGCTTCTTGAACACAAAGGTTTCTGCTATTGGAAATGGTAAAAGCGGGAGCGAAGTGAAGCAAAAAACTGGAGGCCTACAACTGCAGTCGAGTGGCTCTCAAAGTTCTGAAGTCCTGCAATCTGAGGTCGGAACTTTAAATTCATCAAAGGAAACAAATGGAGGAAGTCCAAATGTGTCAGGGTCAGAAGTCACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTGCTGTCAATCATATCAGATCTTCTGTCCACTCTTTGGGAGACATGATGGATACCGAACACGGTATCGTCATGCCAACCAAATGGTTTGCAGCAGCTGGCAGACAGTTGCTGCAACCGTAA 1008 0.4315 MAMQNVYLREHEGTFHNSVGQYSSVNSAPWWNNAFGSSQSVYGGDQSCGQMKPFSLELSNYIDQLGPSKHLGRGVEQLLDKGHTNQFTIFPDDCKMLGDAQNHQATLSLQSSFAVTEPHNRFELGFNQSMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSLASDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTKVSAIGNGKSGSEVKQKTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIRSSVHSLGDMMDTEHGIVMPTKWFAAAGRQLLQP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02093 335 MobiDBLite consensus disorder prediction 233 286 - -
Car04g02093 335 Gene3D - 165 226 - -
Car04g02093 335 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Car04g02093 335 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 330 - -
Car04g02093 335 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Car04g02093 335 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
Car04g02093 335 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Car04g02093 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 330 IPR001289 GO:0003700|GO:0006355
Car04g02093 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02093 Car-Chr4 27028848 27033487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02093 1 329 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.516 4.53e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car04g02093 CBFB_NFYA 6.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02093 K08064 - gmx:100808195 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02677 03 72514865 72519512 Car04g02093 04 27028848 27033487 PCT