Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02092 ATGTTGTATGAATTTGTGAATGTAGCATATCCATCCATGGCTAGTGCAACCAATCCTTCATTTTCCATATGCCACAAAATCTTCAACTTTTCCCTAATCCATTCTTCCATTTCACTCACCCTTAACTTCCCACATAGAACCATATCCCCAAAACCCCTTAACCTAAAACCCCAATTATTCAACCCTTCTCCTTTCTCACTCTATCCTCTTCACCCACGTTCACTTTCCTTTCATGAAGAAGACTCTGAACCTGAAACTGAAACTGAAACTCAACCCTTACAAAATTCAGACCCTAAACTGTCAAACTCAAACCAATCAACGAGACTCTTCGTGGGGAACTTGCCTTTTTCATTGTCTTCTTCCCAATTGGCTGAGCTTTTCGGAGAGGCTGGAAATGTACTGTCTGTGGAGATTGTGTATGATGACTTCACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAATGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCACTAAAGTTGGAGGTAGGGTTATTAAAGTAAACTTCCCGGAAGTGCCCAAAGTAGGCAAAAAGGCACTAAAGGGCTCAAATTATAGAGGTTATGTAGACAGCCCTCACAAGCTCTATGCTGGAAACCTTGGTTGGGATCTGACTTCCAAAGATCTTAGAAAAGCCTTCGCCAAGCAGCCAGGGTTACTGAGCGCCAAGGTCGTCTATGAAAGGCACAATGCAAAATCTCGAGGATACGGATTTGTCTCCTTTGAAACTGCTGATGATGTAGAGGCTGCTTTGAATGCCATGAGCGGCGTGGAGGTTCAAGGCCGGCCCTTACGACTGAATTTGGCTGCAGATAACAAGAAGCCTTCGCCTCCTCTGGTGATTGATGAAAATAAAGGAAATAATGTTGATAGCTTGGGAATGTTGTTTGGATTAAGCAAATGA 942 0.431 MLYEFVNVAYPSMASATNPSFSICHKIFNFSLIHSSISLTLNFPHRTISPKPLNLKPQLFNPSPFSLYPLHPRSLSFHEEDSEPETETETQPLQNSDPKLSNSNQSTRLFVGNLPFSLSSSQLAELFGEAGNVLSVEIVYDDFTDRSRGFAFVTMGNVEDAEEAIRMFDGTKVGGRVIKVNFPEVPKVGKKALKGSNYRGYVDSPHKLYAGNLGWDLTSKDLRKAFAKQPGLLSAKVVYERHNAKSRGYGFVSFETADDVEAALNAMSGVEVQGRPLRLNLAADNKKPSPPLVIDENKGNNVDSLGMLFGLSK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02092 313 MobiDBLite consensus disorder prediction 88 104 - -
Car04g02092 313 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 13 293 - -
Car04g02092 313 SUPERFAMILY RNA-binding domain, RBD 202 289 IPR035979 GO:0003676
Car04g02092 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Car04g02092 313 SMART rrm1_1 207 280 IPR000504 GO:0003723
Car04g02092 313 SMART rrm1_1 108 181 IPR000504 GO:0003723
Car04g02092 313 MobiDBLite consensus disorder prediction 77 104 - -
Car04g02092 313 Gene3D - 72 190 IPR012677 -
Car04g02092 313 PANTHER OS02G0815200 PROTEIN 13 293 - -
Car04g02092 313 SUPERFAMILY RNA-binding domain, RBD 102 186 IPR035979 GO:0003676
Car04g02092 313 CDD RRM_HP0827_like 108 184 - -
Car04g02092 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Car04g02092 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
Car04g02092 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Car04g02092 313 Gene3D - 191 290 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02092 Car-Chr4 27025544 27028101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02092 107 282 Eukaryotic Initiation Factors Gene Family AT2G23350 31.868 2.33e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02092 - - aprc:113861916 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02676 03 72511595 72514230 Car04g02092 04 27025544 27028101 PCT