Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02091 ATGAACGATTTATTATCCAGCTCTTTCTCCCGATTTCGCAGCCAAGAACAAGTCTCGCCGGACAACCACAACCATGTCATCGAAATGTCATCGCCGACAACTGAACAAGCCGGGGTGCACCTCGACAGATTTTTTGAGGAAGTTGAGGGTGTTAAAGAGGAGTTAAAGGAGCTAGATCGTCTCTATGAGAGCCTTCGAGTCTCTCATGAGAAGAGCAAGACCCTTCACAGCGCCAAAGCTGTGAAGGATATTCGATCACGTATGGATGCTGATGTGGCTAATGCTCTCAAGAATGCTAAGCTTGTTAAGGTTCGGCTCGAGGCGCTTGACCGGTCCAACGAGGCTAGTAGGAGTTTGCCTGGCGCTGGACCAGATTCGTCTTCGGACCGGACTAGGAGCTCAGTGGTGAGTGGTTTGAGGAAGAAGCTTAAGGACTCTATGGATAGCTTTAACAACCTTAGACAACAAATCTCCTCTGAATACAAAGAAACTATACAACGTAGATACTATACCGTCACTGGAGAGAAACCTGATGATAAAACCGTTGACCTCCTCATCTCAACTGGTGAAAGTGAAACATTTTTGCAAAAAGCAATTCAGCAACAAGGGAAAGCAAACATCATTGACACAATCCAAGAGATTCAAGAGAGGCATGACATAGTGAAAGAGATGGAAAGAAATCTAATGGAGCTCCACCAAGTTTTCATGGACATGGCCGTTTTGGTCCAATCCCAAGGTGAACAATTGGATGATATCGAAAGCCACGTGGCGCGTGCTAATTCGTACGTTAGAGGTGGGGTCCAACAGTTGCATGTTGCTAGGAAGCACCAAAAGAATACACGAAAGTGGACTTGTATTGCCATCATATTGCTTCTCATTATAATCTTGATCATAGTTTTACCTATTGTCCTTAAAAATTGA 921 0.4463 MNDLLSSSFSRFRSQEQVSPDNHNHVIEMSSPTTEQAGVHLDRFFEEVEGVKEELKELDRLYESLRVSHEKSKTLHSAKAVKDIRSRMDADVANALKNAKLVKVRLEALDRSNEASRSLPGAGPDSSSDRTRSSVVSGLRKKLKDSMDSFNNLRQQISSEYKETIQRRYYTVTGEKPDDKTVDLLISTGESETFLQKAIQQQGKANIIDTIQEIQERHDIVKEMERNLMELHQVFMDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLLIIILIIVLPIVLKN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02091 306 MobiDBLite consensus disorder prediction 112 138 - -
Car04g02091 306 SUPERFAMILY t-snare proteins 39 266 IPR010989 GO:0016020|GO:0016192
Car04g02091 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Car04g02091 306 CDD SynN 41 198 IPR006011 GO:0016020
Car04g02091 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 16 301 - -
Car04g02091 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car04g02091 306 MobiDBLite consensus disorder prediction 1 24 - -
Car04g02091 306 Gene3D - 39 171 - -
Car04g02091 306 SMART tSNARE_6 206 273 IPR000727 -
Car04g02091 306 Gene3D - 196 304 - -
Car04g02091 306 PANTHER SYNTAXIN 16 301 IPR045242 -
Car04g02091 306 CDD SNARE_syntaxin1-like 210 270 - -
Car04g02091 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Car04g02091 306 MobiDBLite consensus disorder prediction 119 134 - -
Car04g02091 306 Coils Coil 41 68 - -
Car04g02091 306 Pfam SNARE domain 247 299 IPR000727 -
Car04g02091 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02091 Car-Chr4 27022010 27024591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02091 29 285 SNARE and Associated Proteins AT3G11820 71.206 1.53e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02091 K08486 - gmx:100793347 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02674 03 72503132 72505089 Car04g02091 04 27022010 27024591 PCT