Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02083 ATGAATCAAGAGATAGATGTTTCACCATTTTTCATGTGCCCCATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAACATCGAAAAATGGCTCTTTTCATCTaacaacaacaacaacaaaacaTGTCCTGTCACAAAACAACAACTCTCACATGATAATCAAAACAATGATCTCATTATTCTCACACCAAATCACACACTTCGTAGACTCATTCAAGCATGGTGCACCATAAACTCTTCTCATGGAATCCAAAGAATTCCAACTCCTAAACCACCAACAACAATAAATCTCATACAGAAAATCATCAAAGAAGCTTCTGATTCTTTAGATTCACCTCATTTACTTATTCAATCGCTTAAAAGACTCAAATCCATCGCTTCCGAAAGTGAAACCAATAGACGGTGTATCGAATCTGCCGGTGCTGTTGAGTTCTTAGCAGAAATCATAACAAAAAACACAAATTCTTCTGCTTCTTCATCTTCAACAGAATTTGAAGATACCCTTTATGATGATTTTGAAGGTTTTGCTTTTGAGTTCAAAGTAGAAGCAGAAGATGAAGCTATAAGCATCCTTCACAATCTTCATTTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTGGACTCTTTGATAAAACTATTGCAAAAGGGTATCTATGATTCAAGAACCTATGCAGTTTTATTGTTGAAATCTATATCAGAAGTAGCCGAACCTGCGAAACTATCGAATTTAAAAACCGAGTTTTTCGTCGAATTAGTCCAGCTTCTCAAGGATCAAATATCGAAAAAAGCATCAAAAGCAACACTACAAACACTGATTCAAGTAGTTGAACATGGAAGAAACAGAGTTAGATTAGTTGAATCAGGATGTGTATGTGTATTGATAGAACTTCTTCTTGATTGCAAAGAGAGAAAGCCATGTGAGATGATTTTGGTGGTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGAGCTGAGATACTAAAGCATGGATGTGGATTAGGTATTGTTTCAAAGAAGATTTTGAGGGTTTCAAATATGGCAAATGATAGAGCTGTGAGGATTCTTTTATCTGTTTCTAGATTCTCAGCTACACCTTTAGTTGTTCAAGAAATGTTGGAAATTGGTATTGTTGCTAAGCTTTGTTTGATTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGATAAAGCTAGAGAGATACTTAAACTTCATGCAAAGTCTTGGAGGCATTCTCATTGTATTCCTACCAATTTGCTTGCTTCATACCCAACACAATAA 1326 0.3499 MNQEIDVSPFFMCPISLQLMKDPVTVSTGITYDRENIEKWLFSSNNNNNKTCPVTKQQLSHDNQNNDLIILTPNHTLRRLIQAWCTINSSHGIQRIPTPKPPTTINLIQKIIKEASDSLDSPHLLIQSLKRLKSIASESETNRRCIESAGAVEFLAEIITKNTNSSASSSSTEFEDTLYDDFEGFAFEFKVEAEDEAISILHNLHLSEQGLKTLLNFKNGEFLDSLIKLLQKGIYDSRTYAVLLLKSISEVAEPAKLSNLKTEFFVELVQLLKDQISKKASKATLQTLIQVVEHGRNRVRLVESGCVCVLIELLLDCKERKPCEMILVVLEMLCQCADGRAEILKHGCGLGIVSKKILRVSNMANDRAVRILLSVSRFSATPLVVQEMLEIGIVAKLCLILQVDSGNKAKDKAREILKLHAKSWRHSHCIPTNLLASYPTQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02083 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 95 IPR013083 -
Car04g02083 441 Gene3D - 100 428 IPR011989 -
Car04g02083 441 PANTHER WDSAM1 PROTEIN 3 439 IPR045185 GO:0061630
Car04g02083 441 SMART Ubox_2 10 84 IPR003613 GO:0004842|GO:0016567
Car04g02083 441 Pfam U-box domain 8 88 IPR003613 GO:0004842|GO:0016567
Car04g02083 441 SUPERFAMILY RING/U-box 5 93 - -
Car04g02083 441 CDD RING-Ubox_PUB 11 57 IPR045210 -
Car04g02083 441 ProSiteProfiles U-box domain profile. 6 91 IPR003613 GO:0004842|GO:0016567
Car04g02083 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 439 - -
Car04g02083 441 SUPERFAMILY ARM repeat 107 417 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02083 Car-Chr4 26707070 26708824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02083 1 439 U-box Gene Family AT3G52450 52.902 3.34e-157 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02083 - - gmx:100809839 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02083 04 26707070 26708824 Car04g02083 04 26707070 26708824 ECH
Car04g02083 04 26707070 26708824 Car03g02672 03 72472552 72474131 PCT