Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02082 ATGGATGAAATTGAAGTTCCACAGTATTTCATTTGTCCAATCTCACTCCAAATAATGAAAGATCCTGTTACTGCCATAACAGGCATAACATACGATCGAGATAGCATTGAACATTGGTTATTCACAAACAAAAACACTACTTATTGTCCTGTCACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAACCATACACTTCGTCGTTTGATTCAATCTTGGTGCACCCAAAATGCTTCACTTGGTATTGATCGAATTCCCACTCCAAAACCACCACTCACAAAAACCCATGTCCTTAAACTGCTCAAAAATTTCGATGATCCATCAGTTCAATTAAAGAGTTTAATCCAATTGGAATTGCTTGCTGCAGAGAATGAAAGGAATAGAAAGTGTTTGTTAGAAGCTCGTGTTCCGAAGGCGATGATTTTGTTCATAGTTGATTGTTATAGAAAAAAAGGTTCCATTTTTGAAGGTCTTGAAGAAGCTCTTAGTTTTTTGCAATTTGTTAAGGTACCAACAGAGGAAATTAATAATCTTTTAGCTGAAAATGATGACATAATTGATTCTCTTATATGGGTTTTGTCTATTGAGGTTAAAAATTCAATCTTTGTGAAATCTCATGCAATTTTAGTGCTTAAAAGATTCATAAACAAAGTTAATACTTTTGTTTTAGAAAGGTTGAAACCTGAATTCTTTGAAAGAATTGTGAAGATTTTAAGAAAAGATTCAATTACACAACAAGGTTTATGTTCTGCTTTACAAGTTTTGTTATGTGCTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGTTGGTGCTGTTTTTGAACTTGTTGAAGTTGAATTAATTTCACAAGAGAAGAGAATAACAGAACTAACTTTTTCTATTCTGTTTCATTTGTGTTCTTGTGCTAATGGAAGAGCTCAATTTTTGAGTCATGAAGGTTCAATTGCATTGTTGAGTGAGAGAATCTTGAAGGTTTCAATGGATGTTGATGATAGAGCTGTTTTTATACTCTCATTGATATCTAAATTCTCTGCCACAAAAATTGTTTTGCAAGAGATGTTGAATGTTGGAATTGTGAATAAGCTTTTCATGTTGCTTCAAGCTAATCATGCTAAGTATTTGAAAGATAAAGCAATGGAAATAATTAAGTCTCATTCTGATGTTTGGAAGAATTCTCCTTGCTTTCCTCAAACATTTTGTTATGAGAGTTTGCATTGGTGA 1233 0.3301 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTYCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKTHVLKLLKNFDDPSVQLKSLIQLELLAAENERNRKCLLEARVPKAMILFIVDCYRKKGSIFEGLEEALSFLQFVKVPTEEINNLLAENDDIIDSLIWVLSIEVKNSIFVKSHAILVLKRFINKVNTFVLERLKPEFFERIVKILRKDSITQQGLCSALQVLLCACPLGRNRLMMVEVGAVFELVEVELISQEKRITELTFSILFHLCSCANGRAQFLSHEGSIALLSERILKVSMDVDDRAVFILSLISKFSATKIVLQEMLNVGIVNKLFMLLQANHAKYLKDKAMEIIKSHSDVWKNSPCFPQTFCYESLHW 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02082 410 CDD RING-Ubox_PUB 10 54 IPR045210 -
Car04g02082 410 SUPERFAMILY ARM repeat 99 376 IPR016024 -
Car04g02082 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Car04g02082 410 SUPERFAMILY RING/U-box 3 84 - -
Car04g02082 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Car04g02082 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
Car04g02082 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Car04g02082 410 Gene3D - 97 395 IPR011989 -
Car04g02082 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Car04g02082 410 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02082 Car-Chr4 26661696 26663173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02082 2 403 U-box Gene Family AT3G11840 41.441 4.15e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02082 - - lja:Lj0g3v0014579.1 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02082 04 26661696 26663173 Car04g02082 04 26661696 26663173 ECH
Car03g02672 03 72472552 72474131 Car04g02082 04 26661696 26663173 PCT