Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02061 ATGTCCGCCGGTGCTGGTGCTTCCGACCGTGGCTCGCCGATGCCGAGGGAGTCCGCCGGAGCACCTATTCGGCCGCCGTTGAAGCGACATCTGGCGTTTGTATCGACGAAACCACCATTTGCACCACCGGACGAGTACCGCAGTTTTGCCGCCGTCGACGCTAGGAAAGTCGCCGATCACGTGAGTGAAGCCGTTGTCGTTAGATCTCCGCTTATAAAGCGGAAGAATGGAATGAATGAGAGTGAAGGAGACTCACAAAAGTGGAGTAACAGCCCTGGATACAGTACCGTAATGAATAGCCCCTTTAAAACACCTTTGTCTGCGAAAGGGGGAAGGGCAAGCAAATCAAAGGTTTCCAAGGAAGGAAGATCATGTCCTCCAACCCCCATCTCAAATGCTGGTTCCCCGTCCCCGCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAATATCAAGAACAGAATACATTGGAAAGGGGTTGAATCTTCTACGCCTGGTGATGTGGATGGTGATATCTCTATGCTCAAGTCAGAAGTGGAAAAACTTTCTTCGGAAGAGNNNNNNNNNNNNNNNNCCTTGCGTTAG 741 0.475 MSAGAGASDRGSPMPRESAGAPIRPPLKRHLAFVSTKPPFAPPDEYRSFAAVDARKVADHVSEAVVVRSPLIKRKNGMNESEGDSQKWSNSPGYSTVMNSPFKTPLSAKGGRASKSKVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLLKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRIHWKGVESSTPGDVDGDISMLKSEVEKLSSEEXXXXXXLR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02061 246 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Car04g02061 246 Coils Coil 224 238 - -
Car04g02061 246 MobiDBLite consensus disorder prediction 82 103 - -
Car04g02061 246 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Car04g02061 246 MobiDBLite consensus disorder prediction 71 142 - -
Car04g02061 246 PANTHER TRANSCRIPTION FACTOR E2F 14 240 IPR015633 GO:0000978|GO:0006357
Car04g02061 246 Coils Coil 162 182 - -
Car04g02061 246 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Car04g02061 246 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 14 240 - -
Car04g02061 246 MobiDBLite consensus disorder prediction 125 142 - -
Car04g02061 246 Gene3D - 140 214 IPR036388 -
Car04g02061 246 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02061 Car-Chr4 26145079 26152116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02061 21 246 E2F-DP Transcription Factor Family AT2G36010 55.000 9.62e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Car04g02061 E2F_TDP 2.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02061 K06620 - gmx:100811762 356.295