Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02054 ATGTTAGGATTCATCTGCACCGTAAGTACCCTGATGGATGGAAAGAACTCTAGTTTATCTTCTACACATTCTGCTCTTGTTCCTCCGAACATTGATCAGCTCAGGGAGGAGTTTTCTTGTGCGATTTGTTTAGATTTATTCTTTGAGCCAACTACCACTTCTTGTGGTCATAGCTTTTGTAGAAAATGTTTGCGAGCTTTCATGGAAAGGTTTCACAAAAGGTGCCCGATATGTAGGCAATGGATGAGAAGAGGAGGATCTTGCACTGTGAGCACCGTTATGTGGAACACAATACAACTCTTGTTTCCTCATGACGTCGAAGCAAGGAAAGTAACCAATGTCTTAAATAGTCAACAAGAGCCTCACGATCCGACCATAGAAAGAGATAACACAAGCGCACAACCAAATGGTAATATGGAACCATTAGGAGAAAGTAGACAGGTCATTACAACAACAGACTTTAATGATTTAAGAACAGTGATTACTGAGTTAAGAAGAGATCATGATGAGCTAAGACGTGATGTCGACCAACAAAGGGAGATACTTCAACAGATGCTTGAATCATCTTTTGCTCTAATATATGTATAA 588 0.398 MLGFICTVSTLMDGKNSSLSSTHSALVPPNIDQLREEFSCAICLDLFFEPTTTSCGHSFCRKCLRAFMERFHKRCPICRQWMRRGGSCTVSTVMWNTIQLLFPHDVEARKVTNVLNSQQEPHDPTIERDNTSAQPNGNMEPLGESRQVITTTDFNDLRTVITELRRDHDELRRDVDQQREILQQMLESSFALIYV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02054 195 Coils Coil 154 188 - -
Car04g02054 195 MobiDBLite consensus disorder prediction 116 147 - -
Car04g02054 195 Pfam Zinc finger, C3HC4 type (RING finger) 40 78 - -
Car04g02054 195 SMART ring_2 40 78 IPR001841 -
Car04g02054 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 109 IPR013083 -
Car04g02054 195 SUPERFAMILY RING/U-box 32 102 - -
Car04g02054 195 ProSitePatterns Zinc finger RING-type signature. 55 64 IPR017907 -
Car04g02054 195 MobiDBLite consensus disorder prediction 128 147 - -
Car04g02054 195 PANTHER UNCHARACTERIZED 22 174 - -
Car04g02054 195 CDD RING-HC 40 78 - -
Car04g02054 195 PANTHER OS12G0267900 PROTEIN 22 174 - -
Car04g02054 195 ProSiteProfiles Zinc finger RING-type profile. 40 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02054 Car-Chr4 26022416 26023650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02054 23 82 C3H Transcription Factor Family AT3G07200 36.667 1.46e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02054 - - cam:105851930 374.4