Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02050 ATGGGTCGTGTCCGCACAAAAACCGTGAAGAAATCCTCACGTCAAGTTATTGAGAGATACTACTCTCGAATGACCCTAGATTTCCACACAAACAAGAAAATCCTCGAAGAAGTTGCACTCATTCCATCGAAGAGACTCAGGAACAAAATCGCTGGATTCTCAACTCATCTCATGAAGCGTATTCAGAAAGGACCTCGTGAACGTCGTATGGATTTCGTTCCTGAAGTTTCTGCTATCAGGACTGATCATATTGAAGTTGATAGGGAAACTTTAGATATGCTTGCTGCTCTTGGTATGGCGGAGATTCCTGGTGTTGTTCAGGTTGATCCTGTTCCTGTTCAGCAGATTCCGTTTGCTCGCGGTGGTGCTGCTGGTGGAAGGAGAAAATGGCAGAGTCATCTGCAACACCAATTGGTCCACAACACTATTAGAATTTGA 438 0.4452 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPRERRMDFVPEVSAIRTDHIEVDRETLDMLAALGMAEIPGVVQVDPVPVQQIPFARGGAAGGRRKWQSHLQHQLVHNTIRI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02050 145 PANTHER 40S RIBOSOMAL PROTEIN S17 1 126 IPR001210 GO:0003735|GO:0005840|GO:0006412
Car04g02050 145 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Car04g02050 145 PANTHER 40S RIBOSOMAL PROTEIN S17 1 126 - -
Car04g02050 145 Pfam Ribosomal S17 1 108 IPR001210 GO:0003735|GO:0005840|GO:0006412
Car04g02050 145 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Car04g02050 145 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Car04g02050 145 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02050 Car-Chr4 25942810 25944267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02050 1 128 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 70.000 2.79e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02050 K02962 - gmx:100819067 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02050 04 25942810 25944267 Car04g02050 04 25942810 25944267 ECH