Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02049 ATGGATCTTCAAGGAACAACACTATGGTGGACTCAAAATCAACCACAACAAACTATGCTATTAGTTGAACCAATCCACCATCCCCAACCACAATGGTTCAATTCTCAAACATATCCAAACACACCTCATTTCAACACCAACGAAGAAAACGAAGACAAAGATAACACCGCCATAAAGTTAATCGAAGACGAAAAAGAACCAATGTTCGAAAAACCGTTAACACCGAGCGACGTTGGGAAACTAAACCGCCTAGTGATCCCAAAACAACACGCGGAAAAATACTTCCCACTCGGCGGCGGTGACTCGGGCGAGTGCAAGGGACTATTACTGAGTTTCGAGGACGAGTCGGGGAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGTAGTCAAAGCTACGTGTTGACTAAAGGTTGGAGCCGTTATGTTAAAGATAAGCGTTTAGATGCTGGCGACGTCGTTTTGTTTGAACGACACCGTGTTGATAGTCAGAGGCTTTTTATTAACTGGAGGAGAAGGAAGTTGAATGGGAATGAAACGGCGCAGGTTAGTAGGGGTAAGGTAAGTGATGGGAATGGAAAAAATGAGGTTGCTGTTGGGTGGTCCAGAGGCTTCTATCCTGCGCACCCTTATCCTGCGCATCACCTCTTACCTTACCAACATGATCACTGTCTTCATGCAGGTAGAGGGTCCCCACAAGGTCAGAACCAAAGGACGAAACCGGTAGGAAACAACAGTTCAAGTTCTAGTTCAAGTCCAAGGGAACTTAGGTTATTTGGGGTCACTATGGTATGCCAACCTGAACATGATTCAACACCACAATGTTCCTCCTATGATAGTAACAATATGCCATCAACACAGGGTACAGATCATACCCAACATCTCTACCACTATCATCAACCTTCTTCTCATAATTCTAATTCCAATTCCCACTCTCACGTGGTACGTCACCAACCATATTATTACTAG 969 0.4458 MDLQGTTLWWTQNQPQQTMLLVEPIHHPQPQWFNSQTYPNTPHFNTNEENEDKDNTAIKLIEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRKLNGNETAQVSRGKVSDGNGKNEVAVGWSRGFYPAHPYPAHHLLPYQHDHCLHAGRGSPQGQNQRTKPVGNNSSSSSSSPRELRLFGVTMVCQPEHDSTPQCSSYDSNNMPSTQGTDHTQHLYHYHQPSSHNSNSNSHSHVVRHQPYYY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02049 322 MobiDBLite consensus disorder prediction 230 254 - -
Car04g02049 322 MobiDBLite consensus disorder prediction 270 315 - -
Car04g02049 322 MobiDBLite consensus disorder prediction 224 254 - -
Car04g02049 322 MobiDBLite consensus disorder prediction 270 322 - -
Car04g02049 322 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 31 287 - -
Car04g02049 322 Gene3D - 59 185 IPR015300 -
Car04g02049 322 CDD B3_DNA 67 164 IPR003340 GO:0003677
Car04g02049 322 Pfam B3 DNA binding domain 69 173 IPR003340 GO:0003677
Car04g02049 322 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 287 IPR044800 GO:0003700
Car04g02049 322 SUPERFAMILY DNA-binding pseudobarrel domain 64 172 IPR015300 -
Car04g02049 322 SMART B3_2 69 174 IPR003340 GO:0003677
Car04g02049 322 ProSiteProfiles B3 DNA-binding domain profile. 69 174 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02049 Car-Chr4 25881831 25884841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02049 60 268 RAV Transcription Factor Family AT5G06250 52.074 2.90e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car04g02049 B3 2.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02049 - - cam:101511950 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02049 04 25881831 25884841 Car04g02049 04 25881831 25884841 ECH
Car03g02638 03 72168324 72170267 Car04g02049 04 25881831 25884841 PCT