Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02018 ATGCCAATCTCATATTCACTTTCACTCTCATCATCCATTCTGCCTAACCCAAACCTCCGTCCAATCCAATTCCGAACCCAAAACAACCGCCATTTCCCGAACCTCAGAATCCGAAGCTCCAACCTAACCACCCATACCTTACAGTTTCTAAAACCGTACCTAATATCACAGCACAAAACAATCCTCTCCGGTTGGCTCTGCAGCGCTATCTCCGCCTACTCACTCTCTAACCTTCTCTCGAAATTCTCCGCCATCACCACCGCCACCACAGTCGACGCCACACAGGGATTCGCGCTCGGAGGTTTGGTTATTGTTCGATTGATTGCAAATTACGTGCAGCATGCGCTTCTATGGGAAGCTTCACTCAACGCAGTTTACGATGTTCGTGTTCACGTTTTCGATCGCGTTGTGCAGAGAGAACTTGGTTTTTTCGAAGCTAACGACGCCGTTTCGAGCGGTGATATTGCTTATCGAATCACCGCTGAAGCTTCTGATCTTGCCACTACCTTATACGCTCTTCTTAATATCATAGTACCTAGTACTCTGCAATTGTCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGCCCTTTCTTTGATTACAGCCACGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTGGCAAGATATCTAAAAAGTCACATATTAGCATTGCTGCTCTCTCAGCATATCTAAATGAGATGCTGCCCGCGATTCTCTTTGTGAAAACGAACAATGCAGAGTTGCTTGAGAGTGCCAGGTTTAAGAAACTAGCCCTGACGGACTATTCTGCAAAGCTGAACAAGAAAAGGATGAAAGCACTCATTCCCCAGGTTATACAAGCCATTTACTTTGGAGTCCTTTCCCTGCTTTGTTCATGTTCAGTGATGATTTCAAGAGGCTCATTTGATCGCCGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATTGAGCCTATTCAGGATATAGGAAAAGCTTACAATGAATGGAGAGAGGGAGAACCAGCTATTGAACGCTTGTTTGCTATGACTAGGTTCAAAAATAAGATGGTTGAGAAACGGGATGCTATTGATTTGGACCATGTTATGGGGGACCTCAAACTCTGTGATGTCTCCTTTAAATATAATAATGACTTGCCTCTTATCTTAAATGGTTTGAATCTTCACATTCGGAGCGGAGAGATAGTCGCGATTGTTGGTCCATCCGGGGGAGGGAAAACAACGCTTTCAAAACTTTTGCTTCGGCTATATGATCCTACATCTGGTTCTATACTGATTGATAACCAAAACATCCAAAACATTCGTGTGCAGAGTTTACGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAAGGATCTGACAACAAAAATTGACATGAAGAGAGTGAAGCGTGTAGCTCAATCTGCTTATGCAGACGAGTTTATTAGAAAACTTCCTGAAGGTTATGAAACCAATATTGGACCAAGGGGATCAACTTTAAGTGGAGGCCAGAGGCAAAGTACAGGCTGGCTATCGCAAGGGCTTTCTATCAAAATTCTTCTATATTAA 1611 0.4277 MPISYSLSLSSSILPNPNLRPIQFRTQNNRHFPNLRIRSSNLTTHTLQFLKPYLISQHKTILSGWLCSAISAYSLSNLLSKFSAITTATTVDATQGFALGGLVIVRLIANYVQHALLWEASLNAVYDVRVHVFDRVVQRELGFFEANDAVSSGDIAYRITAEASDLATTLYALLNIIVPSTLQLSAMIMHMLAISPALSLITATVIPCMVLVVAFLGQELGKISKKSHISIAALSAYLNEMLPAILFVKTNNAELLESARFKKLALTDYSAKLNKKRMKALIPQVIQAIYFGVLSLLCSCSVMISRGSFDRRSLVSFVTSLLFLIEPIQDIGKAYNEWREGEPAIERLFAMTRFKNKMVEKRDAIDLDHVMGDLKLCDVSFKYNNDLPLILNGLNLHIRSGEIVAIVGPSGGGKTTLSKLLLRLYDPTSGSILIDNQNIQNIRVQSLRRHVGVVSQDITLFSGTVAENIGYKDLTTKIDMKRVKRVAQSAYADEFIRKLPEGYETNIGPRGSTLSGGQRQSTGWLSQGLSIKILLY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02018 536 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02018 536 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 37 520 IPR039421 -
Car04g02018 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 521 IPR027417 -
Car04g02018 536 Pfam ABC transporter transmembrane region 67 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02018 536 Pfam ABC transporter 391 521 IPR003439 GO:0005524
Car04g02018 536 SUPERFAMILY ABC transporter transmembrane region 50 352 IPR036640 GO:0005524|GO:0016021
Car04g02018 536 CDD ABC_6TM_exporters 96 348 - -
Car04g02018 536 Gene3D ABC transporter type 1, transmembrane domain 47 353 IPR036640 GO:0005524|GO:0016021
Car04g02018 536 Gene3D - 365 524 IPR027417 -
Car04g02018 536 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 37 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02018 Car-Chr4 24458082 24463668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02018 5 520 Calmodulin-binding Proteins AT2G36910 25.188 6.99e-32 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02018 04 24458082 24463668 Car04g02018 04 24458082 24463668 ECH