Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01992 ATGAAGGTTGTAGCTGCATATTTGCTTGCTGTGATTGGAGGCAACAACAGCCCCTCCGCAAAAACCATCAAGGACATTCTTGGTTCCGTTGGATCAGAAGCCGAAGATGAAAGGATTGAATCGTTTTTGTCTGAAGTTAGTGGCAAAGATATAGCTGAGATTATTGCTGCTGGTAAGGAAAAGTTGGCATCAGTGCCCTctggtggtggtgctgttgctgtttccgctgcacctgcgagtggtggtggggctgctccagcagctgctgAGGCAAAGAAGGAGGAGAAGGTGGAGGAGAAAGAAGAATCAGATGATGATATGGGTTTCAGTCTTTTTGATTAA 342 0.3421 MKVVAAYLLAVIGGNNSPSAKTIKDILGSVGSEAEDERIESFLSEVSGKDIAEIIAAGKEKLASVPSGGGAVAVSAAPASGGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01992 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
Car04g01992 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Car04g01992 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Car04g01992 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Car04g01992 113 MobiDBLite consensus disorder prediction 74 113 - -
Car04g01992 113 Pfam 60s Acidic ribosomal protein 17 112 - -
Car04g01992 113 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01992 Car-Chr4 23852774 23854933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01992 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 70.796 2.11e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01992 K02943 - gmx:100499761 121.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01992 04 23852774 23854933 Car04g01992 04 23852774 23854933 ECH