Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01986 ATGATGGAGAAAAGAAGGGGTGGAAGGAAGAAGTTCCATGAGACAAGACACCCAATTTACAAAGGTGTGAGACAAAGGAATGGAAAATGGGTGTGTGAGTTACGACAACCTAACAACAAAACTCGTATTTGGCTTGGAACATTTTCTCACCCCGACATGGCAGCTATAGCTTATGATGTTGCCGCTTTGGCTTTCAAAGGTGAATCCGCTTCCTTAAATTTCCCTCATGCAGCTACCTCTTTGCCACGTCTTAATTCGCGAACTTCTTCTATTAGGTCTATTCAGTTTGCCGCGATGAAAGCAGCTAAGAATCACTTTTTTACTTGTCAGGACTCAGAACCATTCCTGACTGAAATTGTAAGGAACGACTCTGAGTCTGTAGATTGTCAGCTAAATGTTTGCTTGGTGAAGTCTTTGGAAGATTCTAGAAGCTTCTTCTGGGACGAGGATGAGATTTTCAATATGCCAGGTTTAATAAACAGCATGGCGGAAGGGTTGATTATTACACCACCGGCGTTGCAGAGAGGGTTCAATTGGGTTGACGGAGAATCTACCATGGATTTGACTCTATGGGAAAGTTGA 582 0.4296 MMEKRRGGRKKFHETRHPIYKGVRQRNGKWVCELRQPNNKTRIWLGTFSHPDMAAIAYDVAALAFKGESASLNFPHAATSLPRLNSRTSSIRSIQFAAMKAAKNHFFTCQDSEPFLTEIVRNDSESVDCQLNVCLVKSLEDSRSFFWDEDEIFNMPGLINSMAEGLIITPPALQRGFNWVDGESTMDLTLWES 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01986 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 192 - -
Car04g01986 193 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Car04g01986 193 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Car04g01986 193 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 8 192 - -
Car04g01986 193 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Car04g01986 193 SMART rav1_2 19 81 IPR001471 GO:0003700|GO:0006355
Car04g01986 193 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Car04g01986 193 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Car04g01986 193 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677
Car04g01986 193 ProSiteProfiles AP2/ERF domain profile. 19 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01986 Car-Chr4 23716040 23716644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01986 4 191 AP2-EREBP Transcription Factor Family AT4G25470 44.041 4.70e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g01986 AP2 5.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01986 - - aprc:113870892 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01986 04 23716040 23716644 Car04g01986 04 23716040 23716644 ECH
Car04g01986 04 23716040 23716644 Car03g02581 03 71645136 71646467 PCT