Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01978 ATGGAACCGCAACAACATTATAGAAGATTTGTTGTATTGGGAGAAAATGGAAGAGCCACGGTTGAATTGTTTTATCCTATTATCAATGGTGTTTATGAAATGATTCCTGCTATTCCTTTTCGCAATCATAATAGAAACATCATTTTCTCACATATGTGTATCGAAGATGATCACTTTCTTCTTTGTGAAAGCAACAACAACCATATTAACGAGGTTCATAGTAGAATGAAAACTCAAGATGTCATACCAATTTATGGTCAAGATGGCCACTACGTTATTCAAGAAAGTAACAGCAATCAAAATAATCAAACTCCGACAGGAAGAATAACAAAAGTTACCGTTCAGAATCTTGAAAGAATTAGAATTGATGAAGAAACTATTGCTGAGACTTTAACATGTTCCATATGTCTTGAGGAGTTTTTACTTGGATCGAAAGCTATTCGTTTGCCTAGTCCATGCTCACACATTTATCACGAAAATTGTATTATGAAATGGCTCAATAGGTCAAACACATGCCCTTTGTGTCGTAGACCTATCTCATGTATTCTCTTGTTTTGTTAA 561 0.344 MEPQQHYRRFVVLGENGRATVELFYPIINGVYEMIPAIPFRNHNRNIIFSHMCIEDDHFLLCESNNNHINEVHSRMKTQDVIPIYGQDGHYVIQESNSNQNNQTPTGRITKVTVQNLERIRIDEETIAETLTCSICLEEFLLGSKAIRLPSPCSHIYHENCIMKWLNRSNTCPLCRRPISCILLFC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01978 186 SMART ring_2 133 175 IPR001841 -
Car04g01978 186 ProSiteProfiles Zinc finger RING-type profile. 133 176 IPR001841 -
Car04g01978 186 Pfam Ring finger domain 132 176 IPR001841 -
Car04g01978 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 181 IPR013083 -
Car04g01978 186 CDD RING-H2_PA-TM-RING 132 176 - -
Car04g01978 186 SMART ringv_2 132 176 IPR011016 GO:0008270
Car04g01978 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 178 - -
Car04g01978 186 SUPERFAMILY RING/U-box 113 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01978 Car-Chr4 23606503 23607063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01978 96 176 C3H Transcription Factor Family AT1G14200 34.568 1.67e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01978 - K11982 cam:101490108 109.768