Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01977 ATGAACTCAAAAAATGAAATTAACTCTCCAAAATTTTCATCTGCTTTTGATTCTTCTTCATTTTCTATGGATTTTGAACCATCAGTGCCCGTTCCTATGGAGTGTTTACAAATGAGCCCTGTTCCTCCATTTCTTTCAAAAACTTTCGATTTAGTCGATGACCCTTCTTTGAATCCAATTATATCTTGGAGTTCTAATGGTGTTagtttcactgtgtgggaccctttggaatttgcaagaattgtattacctcgtcatttcaagcacaacaatttctcaagttttgttcgtcagcttaatacttatGGATTCCGGAAGATCGATACCGACAAATGGGAGTTTTTCAATGAAGGATTCCAGAAAGGGAAGAAGCATTTACTGAAGAACATTCAAAGGAGAAGGTCGTCTCAATCGCAACAAGTTGGTAACTATGTTGGAActtcttcttcttcttcttcttcCGATGCTGCAGGGAAATCTGGAGTTGAAATTGAGGTAGAAAAATTGAAAAAGGAAAGAAGTGTGCTAATGCAAGAAATGATTGAATTGCAGCAACAACAACGAGTGACAGCTCGTCATGCAGGTAATGTGAATCAAAGGCTTCAATCAGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTAGCCAAGTTGTTTCAAAATCCGGACTTTTTAGCTCGCCTTAATCGGAAGAAGGAACAACAAAGAGATATAGAATCTCCCAGAGCGAAAAGGAAGTTTGTTAAGCAACACCGAAATGAAACAGAAACAACATCAGAAGAAAATCTCAAAGATGAGAAGAAGATAGTCAGGTATCAACATCAAGTTTCCATTGAAAACTCTCCTCACTATGTTTCACATGATTTGGAAAGAGATATGAGTGAAGGGGTTGAAGATTTTGCTTCTCAAATTGAGAATATTTCATCAGATGAATTGTCTGCAATGCATGGTATTATTGGAGAAGGGTCATTTAGTTTTGGACTGGAAGAACCCCTTTTCAAAGGAAAAAATGTTATTAGTCCAAATGAAGAAATTGTTCCTAAGAAATTTGTTAATTTTCCTGAGGAGAAAGGATTCCAAGAGTTTCAATGTTTCAAGCAAGAAGATATATGGGACACAAACCTCAATGTTGGTGTTGCTGCTCCAAGCAGTGGCAATGAGCTTTGGGAAAATCCTATGAATTATGGAGTACTAGACTTTGGAGTTACAAGTGAAATGTCAGAATCAGATATTTGGGATATTGGTTTTGGAAGTTTGGGTATTGATAACTGGCCAGTTGATGAATCTACTCTTGAGATTGATAGTCAAGTTGGTAAGCCAAAAGATGATAGTCCATGCTAA 1341 0.3363 MNSKNEINSPKFSSAFDSSSFSMDFEPSVPVPMECLQMSPVPPFLSKTFDLVDDPSLNPIISWSSNGVSFTVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGTSSSSSSSDAAGKSGVEIEVEKLKKERSVLMQEMIELQQQQRVTARHAGNVNQRLQSAEQRQKQMVSFLAKLFQNPDFLARLNRKKEQQRDIESPRAKRKFVKQHRNETETTSEENLKDEKKIVRYQHQVSIENSPHYVSHDLERDMSEGVEDFASQIENISSDELSAMHGIIGEGSFSFGLEEPLFKGKNVISPNEEIVPKKFVNFPEEKGFQEFQCFKQEDIWDTNLNVGVAAPSSGNELWENPMNYGVLDFGVTSEMSESDIWDIGFGSLGIDNWPVDESTLEIDSQVGKPKDDSPC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01977 446 Coils Coil 159 186 - -
Car04g01977 446 Gene3D - 36 134 IPR036388 -
Car04g01977 446 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 MobiDBLite consensus disorder prediction 231 262 - -
Car04g01977 446 MobiDBLite consensus disorder prediction 133 158 - -
Car04g01977 446 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 441 IPR027725 -
Car04g01977 446 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Car04g01977 446 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 MobiDBLite consensus disorder prediction 133 161 - -
Car04g01977 446 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01977 446 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 31 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01977 Car-Chr4 23601632 23604520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01977 29 428 HSF AT5G03720 44.417 6.82e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car04g01977 HSF_DNA-bind 2.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01977 K09419 - gmx:100780835 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01977 04 23601632 23604520 Car04g01977 04 23601632 23604520 ECH