Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01967 atgatcatgatgatgaactctgtcatcatcttcttcttcttcaCAATCTACATTGTACCATGTCTAACACATAATGACACACAAGCACTCACCCTCTTCCGCCGCAATACCGACACACACGGCCGCCTCCTGACTAACTGGACTGGCACCGACGCCTGCTCCGCCTCATGGCACGGCGTCATTTGCTCCCCAAACAACCGTGTCACGACTCTCACTCTCCCTTCCCTCAATCTCCGAGGACCCATAGAATCTCTCTCTCCTCTCACCCACCTCCGCCTCCTCGACCTCCATAACAACCGCCTTAACGGTACCGTTGCACCTTCTCTCCTCTCCAATTGCACAAATCTCAAACTTCTCTACCTCGCCGGAAACGACTTCTCCGGCGAAATCCCACCGGAAATCTCCTCCCTGAAAAACCTCCTCCGCCTTGACCTCTCCGACAACAACCTCGCCGGCGAAGTTCCCAGCGAAATATCCCGCTTAACCAACCTGCTCACTCTGAGACTTCAGAACAACGCACTCTCCGGCAACATCCCTGACCTCTCATCCGCCATGCCGAATCTCACAGAACTCAACTTAACCAATAACGAATTCTCCGGTCACGTGCCAAACTCATTGCTGAACAAATTCAGCAAAGAAAGCTTCTCCGGTAACGAAGGTTTATGCGGTTCAAAATCGTTCCCGGTTTGTTCCTTCACCGAAAACAACCCTCTTTCTCCTGAACCGGTTCAAACCGTTCCTTCAAACCCAAGTTCGTTCCCTGAAACAAGCGTAATCGCAAGACCAATAAGTGAATCTCATAAAGGGTTAAGCCCTGGCGTTATCGTAGCAATAGttgttgcaaattgcgttgcattgttggttgttacttcgtttattgttgctcattgttgtgctAAAGGGAGAGGGTATAAAAGTAATTCCATAATGGGTAGTGAAGGTGGGAAGAGAAAAAGTGGGAGTAGTTATGGTGGTGAGAAGGTGTATAATGGAAACGGTGGGGGTGTTGATAGTGATGGGAATGGGACAAGTGGAACTGAAATGAGTAAGCTTGTGTTTTTTGATAGGAGAAGTGAGTTTGAGTTGGAGGATTTGTTACGTGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCAGTGCTTGATGATGGTAGTACTGTTGCTGTTAAGAGGCTTAAAGATGCAAACCCTTGTGCTAGACATGAGTTTGAACAGTATATGGATGTCATTGGGAAGCTTAAACACCCTAATATTGTTAGACTTAGAGCTTATTATTATGCCAAGGAAGAAAAGCTTCTTGTTTATGATTATCTTTCAAATGGAAGCTTGTATGCTCTTCTTCATGGGAACCGTGGACCGGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGGCTTTGTCGGATTCATGCAGAGTATAGTGCAGCAAAAGTACCTCATGGAAACGTGAAATCATCTAATGTGCTACTTGACAAGAATGGCAATGCTTGCATATCTGACTTTGGCTTGTCACTGCTGTTAAACCCTGTTCATGCAATTGCAAGATTGGGAGGGTACAGAGCACCTGAACAGACAGAACAAAAGAGACTGTCTCAGCAAGCTGATGTGTACAGTTTTGGAGTGTTGCTGTTGGAAGTTCTCACAGGGAAAGCTCCTTCGTTGCAATATCCTTCCCCAGCAGCTCGTCCTCGTATCGATGAAGAGGAGCAAACTGTGGTCGATCTTCCCAAATGGGTTCGATCAGTTGTGAAAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGCGATACAAGAACATTGAGGAAGAGCTTGTGTCGATGCTACATGTTGGTTTGGCTTGTGTGGTGCCGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAGCAATCTCCTCTAGGGGAGGATTATGATGAATCGCGCAATTCACTTTCACCTTCCATTCCCACCACAGAAGATGGTCTTGTTTAG 2043 0.4459 MIMMMNSVIIFFFFTIYIVPCLTHNDTQALTLFRRNTDTHGRLLTNWTGTDACSASWHGVICSPNNRVTTLTLPSLNLRGPIESLSPLTHLRLLDLHNNRLNGTVAPSLLSNCTNLKLLYLAGNDFSGEIPPEISSLKNLLRLDLSDNNLAGEVPSEISRLTNLLTLRLQNNALSGNIPDLSSAMPNLTELNLTNNEFSGHVPNSLLNKFSKESFSGNEGLCGSKSFPVCSFTENNPLSPEPVQTVPSNPSSFPETSVIARPISESHKGLSPGVIVAIVVANCVALLVVTSFIVAHCCAKGRGYKSNSIMGSEGGKRKSGSSYGGEKVYNGNGGGVDSDGNGTSGTEMSKLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVRLRAYYYAKEEKLLVYDYLSNGSLYALLHGNRGPGRIPLDWTTRISLVLGAARGLCRIHAEYSAAKVPHGNVKSSNVLLDKNGNACISDFGLSLLLNPVHAIARLGGYRAPEQTEQKRLSQQADVYSFGVLLLEVLTGKAPSLQYPSPAARPRIDEEEQTVVDLPKWVRSVVKEEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVPQPEKRPTMVDVVKMIEDIRVEQSPLGEDYDESRNSLSPSIPTTEDGLV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01967 680 Gene3D Phosphorylase Kinase; domain 1 341 442 - -
Car04g01967 680 Gene3D Ribonuclease Inhibitor 21 103 IPR032675 -
Car04g01967 680 Pfam Protein kinase domain 371 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01967 680 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Car04g01967 680 MobiDBLite consensus disorder prediction 309 342 - -
Car04g01967 680 SUPERFAMILY L domain-like 23 211 - -
Car04g01967 680 SMART LRR_typ_2 185 209 IPR003591 -
Car04g01967 680 SMART LRR_typ_2 137 161 IPR003591 -
Car04g01967 680 SMART LRR_typ_2 88 112 IPR003591 -
Car04g01967 680 ProSiteProfiles Protein kinase domain profile. 367 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01967 680 Gene3D Transferase(Phosphotransferase) domain 1 443 668 - -
Car04g01967 680 SUPERFAMILY Protein kinase-like (PK-like) 371 647 IPR011009 -
Car04g01967 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 671 - -
Car04g01967 680 MobiDBLite consensus disorder prediction 655 680 - -
Car04g01967 680 Gene3D Ribonuclease Inhibitor 106 231 IPR032675 -
Car04g01967 680 PANTHER LRR RECEPTOR-LIKE KINASE 19 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01967 Car-Chr4 23359686 23363528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01967 22 676 Receptor kinase-like Gene Family AT2G36570 66.964 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Car04g01967 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01967 - - gmx:100804135 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01967 04 23359686 23363528 Car04g01967 04 23359686 23363528 ECH
Car03g02566 03 71513490 71516378 Car04g01967 04 23359686 23363528 PCT