Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01963 ATGGAGTGGAATTGCAACACAACACACTTTCTTCATCCACCAGACTCTTCCTTAAGCTTCCTCTACAACTACAACCAAACCTCATTTCAAGGAATGGAAGTGAAACAACAGGGGTCGACAGAGACAGTTCTAGAAATGGAAAAAATGATGAAGTACGGAAACCAAGACAAGAAAAAGCGATTAACGAGTGAACAATTGGAAACATTGGAGAGTAGTTTCCAAAAGGAGATAAAATTAGATCCTCAAAGGAAGATGAAGCTTTCAAAAGAGTTAGGATTGCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGAGGTCAAGATGGAAGACCAAGAACCTTGAACAATTGTATGATTTACTTAAACACCAATTTGATGTCGTCTCTAAAGAAAAACAGCAGCTTCAAGATGAGGTAATGAAGTTGAAGGGTATGCTGAAAGAGCAAGGTTCTTCATCTTCTTGTGGTAAAACGCAAGTATCAGCAGTAGATTATCATTATAGAGAAATGTCTGGAGAAGAAACAGAGACAATAGAAAGCACATCAGAGGCAGCTCTATTTGGCTCCAACAGGGTGAGGGAAAAGATTCATCATCACTTGAACAATGCAGGGGGAAACTTTTGTTTCAATATGGAGAATAATTATAACATGAATAACACTGTTCCAGTTTTACCCTACTGGCCTGCTGTTCCTTATAACTATCGGTCCTAA 711 0.3896 MEWNCNTTHFLHPPDSSLSFLYNYNQTSFQGMEVKQQGSTETVLEMEKMMKYGNQDKKKRLTSEQLETLESSFQKEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRSRWKTKNLEQLYDLLKHQFDVVSKEKQQLQDEVMKLKGMLKEQGSSSSCGKTQVSAVDYHYREMSGEETETIESTSEAALFGSNRVREKIHHHLNNAGGNFCFNMENNYNMNNTVPVLPYWPAVPYNYRS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01963 236 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 228 - -
Car04g01963 236 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Car04g01963 236 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Car04g01963 236 CDD homeodomain 57 113 IPR001356 GO:0003677
Car04g01963 236 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Car04g01963 236 Coils Coil 118 138 - -
Car04g01963 236 Gene3D - 50 119 - -
Car04g01963 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 228 IPR045224 GO:0003700
Car04g01963 236 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Car04g01963 236 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Car04g01963 236 SUPERFAMILY Homeodomain-like 49 114 IPR009057 -
Car04g01963 236 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01963 Car-Chr4 23308107 23309935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01963 1 142 Homeobox Transcription Factor Family AT5G03790 51.235 1.27e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car04g01963 Homeodomain 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01963 - - gmx:100778007 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01963 04 23308107 23309935 Car04g01963 04 23308107 23309935 ECH
Car04g01963 04 23308107 23309935 Car03g02562 03 71476918 71479236 PCT