Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01962 ATGATCGACAACAAGCTCATATTATCATTTATAGAGAGGTGGCACGCTAAGACATCGTCATTTCATGTGTCATTTGGTGAAATGACGATTACACTAAATGATGTGGTGAACATACTTCACCTGTCGATTAATGCTATTGGGATGATTATTAAGGAAACTTTACTTGAGGAGGAAAGGTCTAAAGGTGTTCATTTTAGGTTGGAGTGGTTGCATATGTTGTTTGTGAGGCACTCTGGTGTTCAGAGGTTTGATGTCGCTGCTAGAGCATACACACTCCACTTGAAAAGGGATCAAAATTCAACCGCAGCAACCACCGAAGCAACCGCAACCATGGTTCTCAAGACCGAACTGTGCCGTTTCAGTGGGGCGAAGATCTACCCTGGGAGAGGAATCCGATTTATTCGTGGTGATTCTCAGGTGTTCCTGTTTGTCAATTCGAAATGCAAACATTATTTCCACAACAAGTTGAAGCCTTCCAAGCTCACATGGACTGCCATGTACAGGAAGCAACATAAGAAGGATGCTGCCCAAGAAACTGTGAAAAAGAGGCGTAGAGCTACCAAAAAGCCATACTCTAGGTCTATTGTTGGTGCTACTTTGGAAGTTATTCAGAAGAAAAGATCAGAGAAGCCAGAGGTTCGAGATGCTGCCAGAGAAGCTGCTCTTCGTGAAATTAAAGAGAGGGTCAAGAAATCAAAGGATGAGAAGAAGGCTAAGAAGGCAGAAGTTCAGGCCAAAGCACAAAAGTCTGGAAAAGCCAATGTTTCCAAGGGTGCTGCATCCAAAGGTCCTAAGCTTGGTGGTGGAGGTGGAAAGCGCTGA 822 0.4404 MIDNKLILSFIERWHAKTSSFHVSFGEMTITLNDVVNILHLSINAIGMIIKETLLEEERSKGVHFRLEWLHMLFVRHSGVQRFDVAARAYTLHLKRDQNSTAATTEATATMVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKHYFHNKLKPSKLTWTAMYRKQHKKDAAQETVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKSKDEKKAKKAEVQAKAQKSGKANVSKGAASKGPKLGGGGGKR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01962 273 Gene3D Ribosomal protein L24e 113 174 IPR038630 -
Car04g01962 273 Pfam Plant mobile domain 3 44 IPR019557 -
Car04g01962 273 Gene3D - 179 260 - -
Car04g01962 273 MobiDBLite consensus disorder prediction 172 191 - -
Car04g01962 273 CDD Ribosomal_L24e_L24 113 166 IPR000988 -
Car04g01962 273 Coils Coil 222 249 - -
Car04g01962 273 MobiDBLite consensus disorder prediction 227 246 - -
Car04g01962 273 ProSitePatterns Ribosomal protein L24e signature. 120 137 IPR023442 -
Car04g01962 273 MobiDBLite consensus disorder prediction 227 273 - -
Car04g01962 273 Pfam Ribosomal protein L24e 114 177 IPR000988 -
Car04g01962 273 PANTHER 60S RIBOSOMAL PROTEIN L24 108 273 - -
Car04g01962 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 168 - -
Car04g01962 273 PANTHER 60S RIBOSOMAL PROTEIN L24 108 273 IPR000988 -
Car04g01962 273 SMART 4TRASH 118 156 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01962 Car-Chr4 23294442 23299013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01962 111 266 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 1.97e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01962 K02896 - sly:101249118 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01962 04 23294442 23299013 Car04g01962 04 23294442 23299013 ECH
Car03g02561 03 71469770 71471908 Car04g01962 04 23294442 23299013 PCT