Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01961 ATGGGTGACAACCGCGAAGACAACAACACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGAACCGAAGATTACCGACGCGGTGGCTACCACGCCGTCAGAATCGGCGACACCTTCAACGCAGGTCGCTATGTCGTTCAGACCAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACTCATCATTCTAGATATGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCTGCTTTGGATGAGATAACAATTTTGCAACAGATTGCTGAGGGAGACACTGACGATAAAAAATGTGTGGTCAAGCTTTTAGACCATTTCAAGCATTCTGGTCCGAATGGCCAGCATGTGTGTATGGTTTTTGAGTATCTTGGGGATAACCTCTTAACTCTTATTAAGTATACTGATTATCGCGGAATGCCTATCAACATGGTTAAAGAGATATGCTTTCATATTCTTGTTGGATTGGATTATTTACATAAGCAGCTTTCTATCATACATACTGACTTGAAACCCGAAAATATCCTCCTCTTGTCGACGATAGATCCGTCTAAGGATCCTAGAAAGTCTGGTGCTCCTCTTATTCTTCCTAATAGTAAAGACAAGACGGTTTTGGAGTCAATGGTTGGAAAAGACACAAAGAATTCAAATGGGGATTTGATTAAGAATCATAAGAAAAAGATTAAGAGAAAAGCTAAGCAAGCAGCTCATGGATGTGCTAAGAAGGAAGCATCGGAAGGGGTTAATGGTAATCCTGAAACCTCTGTTTCTGTGGAATCATCTCCAAATGCAAGTTTTGCAAGAGAGCAAGCTTCTAGTTCTGCCGGCACTAGTAGGTTATCGGATGCTGATGGAACGAGGTCAAAAGAACAGGGCAACAGAAGAGGAAGCCGCACAGTGAGACAGAAACTGCTGGCCTCGGCTGATCTCAAGTGCAAGTTAGTCGACTTTGGTAATGCTTGCTGGACGTATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGATGCCCAGAGGTTATACTTGGATCAAAATATTCTACATCTGCGGATCTTTGGTCATTTGCTTGCATATGTTTCGAGCTTGCAACTGGAGACGTGTTGTTTGATCCTCACAGTGGTGACAACTTTGATAGAGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCGCGTAAGATTGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGATATGGTGATTTGAGACATATCCGTCGGTTGCGATTCTGGCCATTGAACAAAGTGCTCATGGAGAAATATGATTTTAGCGAGAAAGATGCAAATGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAACGGCCTACAGCTGGTCAGTGCCTGCTACATCCATGGATGAATGCAGGTCCACGTCTTTTGGAGCCATCGGTGCCTTCTTCTAATCACAACCCTGTCGCTAAAACTGCAACTTCTGAGGAGAATAATAAGGACATAGATGAAAGGGAGGCCATGGAAGCTGGAATAGGAAATATCGTCATCAATTCAGATTCTAAACCACTCATGCATTCTCCATCCAAGAAAGCATTCCAAGGTAGCCGCAAGTAG 1641 0.4369 MGDNREDNNTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNAGRYVVQTKLGWGHFSTVWLAWDTHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYTDYRGMPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTVLESMVGKDTKNSNGDLIKNHKKKIKRKAKQAAHGCAKKEASEGVNGNPETSVSVESSPNASFAREQASSSAGTSRLSDADGTRSKEQGNRRGSRTVRQKLLASADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDMSDFLVSILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSVPSSNHNPVAKTATSEENNKDIDEREAMEAGIGNIVINSDSKPLMHSPSKKAFQGSRK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01961 546 PANTHER SERINE KINASE-LIKE PROTEIN 11 541 - -
Car04g01961 546 CDD STKc_SRPK 33 478 - -
Car04g01961 546 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01961 546 MobiDBLite consensus disorder prediction 486 503 - -
Car04g01961 546 Pfam Protein kinase domain 310 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01961 546 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01961 546 MobiDBLite consensus disorder prediction 254 288 - -
Car04g01961 546 MobiDBLite consensus disorder prediction 289 303 - -
Car04g01961 546 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01961 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 541 - -
Car04g01961 546 MobiDBLite consensus disorder prediction 486 509 - -
Car04g01961 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Car04g01961 546 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Car04g01961 546 Gene3D Transferase(Phosphotransferase) domain 1 98 188 - -
Car04g01961 546 Gene3D Transferase(Phosphotransferase) domain 1 302 478 - -
Car04g01961 546 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Car04g01961 546 SUPERFAMILY Protein kinase-like (PK-like) 39 491 IPR011009 -
Car04g01961 546 MobiDBLite consensus disorder prediction 214 306 - -
Car04g01961 546 MobiDBLite consensus disorder prediction 1 24 - -
Car04g01961 546 MobiDBLite consensus disorder prediction 526 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01961 Car-Chr4 23287965 23292746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01961 10 530 EF-hand Containing Proteins AT5G22840 69.466 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Car04g01961 Pkinase 2.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01961 K08832 - gmx:100810777 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01961 04 23287965 23292746 Car04g01961 04 23287965 23292746 ECH