Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01947 ATGAAGAAGCACAACAAAAAGGGTATTAACTGTAATAATGCTCTTGAAACGGAGACACTATTTTGGAAAGCGACGATGGATAAACCGTTTTTAGTTGAATACGCAAATGACGTGTTGGGTTCTACATTTTCGGAAAAATGTCGTCATATTGGCGAAGCTGCTTCTGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTGACTTCACATATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATCTTCATAGTTTGAATTATCTTTATATGGGTGCTTCTAAGACTTGGTATAGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTATTAGGGTTCATGGTTATGGTGGACAAATTAACCCTCTTGGTTAG 450 0.4 MKKHNKKGINCNNALETETLFWKATMDKPFLVEYANDVLGSTFSEKCRHIGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSHMVYLAMLFSWFAWHVEDHDLHSLNYLYMGASKTWYSVPRDAAVAFEDVIRVHGYGGQINPLG 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01947 149 Gene3D Cupin 1 146 - -
Car04g01947 149 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 148 - -
Car04g01947 149 Pfam JmjC domain, hydroxylase 88 139 IPR003347 -
Car04g01947 149 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 2 148 - -
Car04g01947 149 ProSiteProfiles JmjC domain profile. 55 149 IPR003347 -
Car04g01947 149 SUPERFAMILY Clavaminate synthase-like 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01947 Car-Chr4 22836425 22836874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01947 18 49 C2H2 Transcription Factor Family AT5G04240 59.375 1.57e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car04g01947 JmjC 6.1e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01947 - - gmx:100775271 246.514