Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01913 ATGCAAGTGTTAGAAGAACTCATGATGGTTTCAAAGGATCACACACAACAAATCATAAAAGGAAAAAGAACCAAACGTCAAAGGCTACCTTCCCCACTTAGGTTAACCATGTCTTCAAGTTCTTACAATGAAGGTACAAGTTATAAAAGCTATAATAATAACAATTATGATAACAATTCAACACGAGATGTTGATTTGGCTACGATCGGATCGAGCGGCCAATCagaagaagaaaaagaagaagaagaTATGGCGAATTGTTTAATTCTATTAGCTCAAGGTGGTCATCATCATAATGTTTCAAATAATCACAATAGCAACAATTCTTCATATCTTTATGAATGCAAAACATGCAATAGATGTTTTCCTTCATTTCAAGCACTTGGTGGACATAGAGCAAGTCATAGCAAACCTAATAAGGTAAATTGTAATAATATTATTGAACAAAAGCAAGTTATTACAACTTCTTTTGTTGATGATCATAAATATGATCCAACAATGAATACCATACTCTCTTTGCAAGCTTTTAGCACCTCCCctattactactactactactacACCAAAAAAATCAAAAGTTCATGAGTGTTCCATATGTGGTTCTGAATTCTCATCGGGGCAAGCTTTGGGGGGACATATGAGAAGACATAGAGCTCTTGTGaacacatctacaacaacaacgacgacaacaacaacaTCTATGAGTTTGAGTATTGGTAGCCCTAAATCTCATCATGAAGCTAAGAAACCTAGAAATGTTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCATCAAAGAGATCAATCCACGTTTTCTTTTCAACCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 888 0.3176 MQVLEELMMVSKDHTQQIIKGKRTKRQRLPSPLRLTMSSSSYNEGTSYKSYNNNNYDNNSTRDVDLATIGSSGQSEEEKEEEDMANCLILLAQGGHHHNVSNNHNSNNSSYLYECKTCNRCFPSFQALGGHRASHSKPNKVNCNNIIEQKQVITTSFVDDHKYDPTMNTILSLQAFSTSPITTTTTTPKKSKVHECSICGSEFSSGQALGGHMRRHRALVNTSTTTTTTTTTSMSLSIGSPKSHHEAKKPRNVLKLDLNLPAPEVDHQRDQSTFSFQPRENVIAFSNSSLVDCHY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01913 295 MobiDBLite consensus disorder prediction 31 66 - -
Car04g01913 295 MobiDBLite consensus disorder prediction 223 240 - -
Car04g01913 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 216 IPR013087 -
Car04g01913 295 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 12 294 - -
Car04g01913 295 SUPERFAMILY beta-beta-alpha zinc fingers 112 216 IPR036236 -
Car04g01913 295 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Car04g01913 295 SMART c2h2final6 113 135 IPR013087 -
Car04g01913 295 SMART c2h2final6 194 216 IPR013087 -
Car04g01913 295 MobiDBLite consensus disorder prediction 223 249 - -
Car04g01913 295 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Car04g01913 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Car04g01913 295 MobiDBLite consensus disorder prediction 13 66 - -
Car04g01913 295 Gene3D Classic Zinc Finger 173 251 - -
Car04g01913 295 PANTHER ZINC FINGER PROTEIN ZAT5 12 294 - -
Car04g01913 295 Pfam C2H2-type zinc finger 113 138 - -
Car04g01913 295 Pfam C2H2-type zinc finger 193 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01913 Car-Chr4 21022203 21023321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01913 3 295 C2H2 Transcription Factor Family AT5G03510 38.413 3.80e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01913 zf-C2H2_6 7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01913 - - mtr:MTR_1g062780 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00873 04 8550974 8552120 Car04g01913 04 21022203 21023321 ECH
Car04g01913 04 21022203 21023321 Car04g00873 04 8550974 8552120 ECH
Car04g01913 04 21022203 21023321 Car04g01913 04 21022203 21023321 ECH