Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01909 ATGCTCCAAAAAACCTGCATTTTCCTAATCTCACTTCTTTGTTCCTTTTTTCCCCATGGAACATCAATGTTTAACCTTACTCTCCCTGCTCAACATCCAGACCCTGAAGCTGTTGCCATTCAAGTTCACAGGCAAGTGAATGCTTCAATGGGAAGAAGGGAAATGCTAGCAACATCAGAGAAAGAACTATCATCCTGTCTAACAGGAAATCCAATTGATGATTGTTGGAAATGTGACAGAGATTGGTCCAACAATCGTCAAAGACTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTCTACATTGTTACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAACCTTTGTGGATTGTGTTTCCTAGTAACATGATGATTCAGTTGTCACAAGAGCTTATTTTTAATAGCTACAAAACCATTGATGGGCGTGGTGCTGATGTTCATATTGTTGGTGGTGGATGTATTACTCTTCAATATATTACTAATGTTATTATACATAACATTCATATTCATCATTGTCATCCATCTGGTAACACTAACGTGCGGTCGAGTCCAGAACACTACGGGTTCCGAACAGAATCAGACGGAGACGGAATCTCAATATTCGGATCAAGCAACATATGGATAGACCACTGCACACTCTCACGTTGCAAAGACGGTTTAATTGACGCCGTTATGGGTTCAACCGCAATAACAATCTCCAACAACCATTTCTCACACCACAACGAGGTTATGCTCTTAGGCCACAGCGACCACTACACTCCCGACTCTGCAATGCAAGTCACTATTGCATTCAACCACTTTGGTCAACAATTGGTTCAACGCATGCCACGTTGCAGGCTTGGTTACATCCACGTCGTCAATAACGATTTCACCCGATGGGAGATGTATGCTATTGGTGGAAGTGCGGGTCCCACTATTAACAGTCAAGGTAACCGATATATGGCTCCTGAGGATGTTGATGCGAAACAAGTGACGAAGAGGTTGGATACGGGCGAAGGAGAATGGAGTTCTTGGAATTGGAGATCGGAAGGCGATGTTATGGAGAATGGAGCATTTTTTGTTAAGTCCGGTGGTGAAAGTGAAAGTATGTATCAGAAAGCTTATAGTTTTGATCCTAAAGCTGTTGATAGGATTTCTTATCTCACTATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGATAATAATATGGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATTCTATGTCATATTCCGGACCAGACTACACAGATGAAATGTCACAGACTACAATGTCGTTCACCCATTCACTTACTTTCACTATTGTTTCTGTTTTTGTTGTACTTTTATGTTTGTTGTCTCAACCATCGCCCCTAACTATTGATCTTTAA 1443 0.4165 MLQKTCIFLISLLCSFFPHGTSMFNLTLPAQHPDPEAVAIQVHRQVNASMGRREMLATSEKELSSCLTGNPIDDCWKCDRDWSNNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIQLSQELIFNSYKTIDGRGADVHIVGGGCITLQYITNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSSNIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSAGPTINSQGNRYMAPEDVDAKQVTKRLDTGEGEWSSWNWRSEGDVMENGAFFVKSGGESESMYQKAYSFDPKAVDRISYLTMAAGVLGVARDNNMGMWTRAPNGGGDYSMSYSGPDYTDEMSQTTMSFTHSLTFTIVSVFVVLLCLLSQPSPLTIDL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01909 480 Gene3D - 69 411 IPR012334 -
Car04g01909 480 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Car04g01909 480 Pfam Pectate lyase 153 322 IPR002022 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Car04g01909 480 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Car04g01909 480 SMART amb_all 144 341 IPR002022 -
Car04g01909 480 SUPERFAMILY Pectin lyase-like 58 386 IPR011050 -
Car04g01909 480 PANTHER PECTATE LYASE 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01909 Car-Chr4 20941189 20944244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01909 1 478 Polysaccharide Lyase AT3G53190 68.672 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01909 K01728 - gmx:100815062 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01909 04 20941189 20944244 Car04g01909 04 20941189 20944244 ECH
Car03g02525 03 71147829 71151355 Car04g01909 04 20941189 20944244 PCT