Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01882 atGGCGAATCAACCTGAAACCTCAGATTCTAAGGGAACTAAGCGAGATTTTAGCACGGCGATTTTGGAGCGCAAGAAGGCGCCAAACCGTCTTGTTGTCGATGAGGCCGTCAACGACGACAACTCCGTCGTCGCACTTCACCCTGACACCATGGAGAAACTCCAACTTTTTCGCGGTGACACAATTCTGATCAAGAAAAGGAAAGATACTATATGTATTGCACTTGCTGATGAGACTTGTGAGGAGCCAAAGATTAGAATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGAGATGTCGTTTCTGTTCATCAATGTCCTGATGTTAAATATGGAAAGCGAGTTCACATTCTTCCTGTTGATGATACAATTGAAGGGGTTACTGGGAATCTCTTTGATGCCTACCTAAAACCTTATTTCCTGGAGGCATATCGTCCAGTTAGAAAGGGGGATCTCTTCCTCGTGAGAGGGGGGATGAGAAGTGTCGAATTCAAGGTTATTGAATGTGACCCTCCTGAGTATTGTGTTGTTGCTCCTGACACTGAGATCTTCTGTGAAGGAGAGCCCGTTAAACGGGAAGATGAGAATCGATTAGATGAGGTTGGTTATGATGACGTTGGTGGTGTTAGAAAGCAAATGGCTCAGATTAGAGAACTGGTGGAACTGCCATTGAGGCATCCACAGCTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGTATTTTGTTGTATGGACCCCCTGGATCTGGTAAGACTTTAATTGCACGAGCTGTTGCAAACGAAACTGGTGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAGCTGGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCTTTCGAAGAAGCTGAGAAGAATGCACCCTCAATCATCTTCATTGATGAGATTGATTCCATTGCTCCAAAGAGGGAGAAGACTAATGGTGAAGTTGAGAGGAGAATTGTTTCCCAGCTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCACATGTAATTGTTATTGGAGCAACAAATCGTCCCAATAGCATCGACCCTGCTCTTCGGAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTACCAGATGAAGTTGGACGTCTTGAGGTTCTTCGTATCCATACAAAAAATATGAAGCTTGCTGAAGATGTTGATTTAGAAAGAATTGCTAAGGAGACCCACGGATATGTTGGTGCTGATTTAGCTGCTTTGTGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGATGTGATTGACCTAGAAGATGAAACCATTGATGCTGAGATACTAAACTCAATGGCAGTCACAAATGAACATTTCCAGACTGCCCTTGGATCCAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGCAAGATATTGGTGGTCTTGAAAATGTTAAGCGAGAACTCCAGGAGACTGTTCAATATCCAGTGGAACATCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTGTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCCAAAGCTATTGCCAATGAATGTCAAGCAAACTTCATTAGTATCAAAGGTCCTGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGATTCTATTGCAACACAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCAAAGAAAACTGTGTTTATCATTGGTGCAACTAATAGACCAGACATTATAGACCCTGCTCTTTTACGACCGGGACGTCTGGACCAGTTGATTTATATTCCCCTTCCGGATGAGGATTCCCGCCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAGGATGTTGACCTCAGAGCTCTTGCCAAGTACACTCAAGGTTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTTCATGCAAGTATGCTATTAGAGAGAACATTGAGAAGGATATTGAGAGAGAAAGGAGGAGAAGCGAAAATCCCGAGGCTATGgaagaggataatgaagatgatgatgtagctgaaATCAAAGCAGCCCATTTTGAAGAATCAATGAAGTATGCAAGAAGGAGTGTTAGTGATGCTGACATTCGCAAGTACCAAGCGTTTGCCCAAACATTACAGCAGTCAAGAGGGTTCGGATCCGAGTTCAGGTTTGCAGATGCCAGCACTGGTGGTACTGCTACTGCAGCAGCTGACCCTTTTGCAAGTGCTGGTGGAGCTGATGAAGATGACCTTTACAGTTAG 2421 0.4366 MANQPETSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIECDPPEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWQDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIERERRRSENPEAMEEDNEDDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADASTGGTATAAADPFASAGGADEDDLYS 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01882 806 SMART AAA_5 239 375 IPR003593 -
Car04g01882 806 SMART AAA_5 512 651 IPR003593 -
Car04g01882 806 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 766 IPR005938 GO:0016787
Car04g01882 806 CDD AAA 209 372 - -
Car04g01882 806 Gene3D - 7 110 - -
Car04g01882 806 Gene3D - 653 762 - -
Car04g01882 806 SUPERFAMILY ADC-like 27 108 IPR009010 -
Car04g01882 806 SMART CDC48_N_2 30 111 IPR003338 -
Car04g01882 806 Gene3D - 466 649 IPR027417 -
Car04g01882 806 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 109 IPR003338 -
Car04g01882 806 MobiDBLite consensus disorder prediction 710 729 - -
Car04g01882 806 CDD AAA 482 649 - -
Car04g01882 806 SUPERFAMILY Cdc48 domain 2-like 110 202 IPR029067 -
Car04g01882 806 Gene3D - 111 207 - -
Car04g01882 806 PANTHER AAA-FAMILY ATPASE 5 784 - -
Car04g01882 806 ProSitePatterns AAA-protein family signature. 619 637 IPR003960 GO:0005524|GO:0016887
Car04g01882 806 Pfam AAA+ lid domain 671 711 IPR041569 -
Car04g01882 806 Pfam AAA+ lid domain 395 437 IPR041569 -
Car04g01882 806 Gene3D - 208 372 IPR027417 -
Car04g01882 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 464 IPR027417 -
Car04g01882 806 Pfam Cell division protein 48 (CDC48), domain 2 130 193 IPR004201 -
Car04g01882 806 Gene3D - 374 465 - -
Car04g01882 806 SMART CDC48_2_2 128 194 IPR004201 -
Car04g01882 806 MobiDBLite consensus disorder prediction 785 806 - -
Car04g01882 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 763 IPR027417 -
Car04g01882 806 ProSitePatterns AAA-protein family signature. 343 361 IPR003960 GO:0005524|GO:0016887
Car04g01882 806 Pfam ATPase family associated with various cellular activities (AAA) 243 372 IPR003959 GO:0005524|GO:0016887
Car04g01882 806 Pfam ATPase family associated with various cellular activities (AAA) 516 649 IPR003959 GO:0005524|GO:0016887
Car04g01882 806 PANTHER - 5 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01882 Car-Chr4 20372403 20376335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01882 445 708 Calmodulin-binding Proteins AT3G56690 47.348 2.13e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01882 K13525 - gmx:100791603 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01882 04 20372403 20376335 Car04g01882 04 20372403 20376335 ECH