Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01878 ATGGCTTTATATGAGCATTCAGATGTTGTTCAATGGGGTATGAATCTTTTCGATGCCGAACCTAGTTATAGTCCTGGATACTATGGTGACATAATTCAACATGATACTGGTGATGTCTATGATGATGAACACTACTTTCACAGCCATTATGATTCTGTAAGTAACCAAGTAGAGAACGATGAGATCATTGCACGTACTCTTCAAGAAGAGTTTTCGCAGCTAGAGATTGCCGAGAGTTCAAGGTATTCACAGGCAGATGAACAACACTTTCATGCATCTCATGAGGCTCCTTATGATTGGCATAACACACCGATGATGAACTATTGTTCAGGAGGTCATGATTATGCTCATGAAGGAGTTAATGAAATAGAACCTTCGAGTTCATGTTGTAGTCCTTGTGAAGTGGGGGGATACTCATTGGATCTTGTTGACAATTATCCATTTGATGATGATATTGGGAGGAGATTGAGTCAGATAACTCCAATTCCTCACATTCCAAAAATTAATGGAGAAATTCCTTCTATTGATGAAGCAACATCAGATCATGAAAGACTTCTGGATAGATTGCAATTATATGACTTTGTGGAGAATAAGGTTCAAGGTGATGGTAATTGTCAGTTCCGCGCATTATCTGATCAGTTGTATAACACACCTGATCACCACAAGTTTGTGAGACGAAAAGTCGTGAACCAGCTGAAGTCTCATCCAGATATTTATGAAGGTTATGTTCCCATGGAATATGGTGAATATTTGGAAAAGATGTCTAGGGGTGGTGAATGGGGTGATCATGTCACTCTTCAAGCCGCTGCGGATTCATATGGTGTAAGAATATTTGTGATGACTTCTTTCAAGGACACCTGTTGCATTGAGATTCTTCCTAGTTCTGAGAAACCAAAAGGAGGTAAAATTTTCTTAGTAGCGAGGCCTGAAGTGACTACGATTTAG 945 0.3947 MALYEHSDVVQWGMNLFDAEPSYSPGYYGDIIQHDTGDVYDDEHYFHSHYDSVSNQVENDEIIARTLQEEFSQLEIAESSRYSQADEQHFHASHEAPYDWHNTPMMNYCSGGHDYAHEGVNEIEPSSSCCSPCEVGGYSLDLVDNYPFDDDIGRRLSQITPIPHIPKINGEIPSIDEATSDHERLLDRLQLYDFVENKVQGDGNCQFRALSDQLYNTPDHHKFVRRKVVNQLKSHPDIYEGYVPMEYGEYLEKMSRGGEWGDHVTLQAAADSYGVRIFVMTSFKDTCCIEILPSSEKPKGGKIFLVARPEVTTI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01878 314 Pfam OTU-like cysteine protease 200 286 IPR003323 -
Car04g01878 314 Gene3D - 175 306 - -
Car04g01878 314 SUPERFAMILY Cysteine proteinases 181 298 IPR038765 -
Car04g01878 314 ProSiteProfiles OTU domain profile. 194 310 IPR003323 -
Car04g01878 314 PANTHER CYSTEINE PROTEINASE SUPERFAMILY PROTEIN 28 311 - -
Car04g01878 314 PANTHER OTU DOMAIN CONTAINING PROTEIN 28 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01878 Car-Chr4 20326888 20331205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01878 - - gmx:100811851 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00977 04 9829511 9835557 Car04g01878 04 20326888 20331205 ECH
Car04g01878 04 20326888 20331205 Car04g00977 04 9829511 9835557 ECH
Car04g01878 04 20326888 20331205 Car04g01878 04 20326888 20331205 ECH