Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01876 ATGAGGAACTATGTTCCCTACATTCTCCTCTTTTTCTTCTCTTTCACTCTCTTATTACCAAATATTCAATGTGCCGATGGCACTTTTGCCCCTTCCTTTTATACCGAAGAAATCTACAAAGAACTTCAGAATATCGCTCTCCTTTTAAATAAGGACATTAAATCAAGTTTAGGTTTCTGCATTAAGGATCCGAAAAATGATTGGGAGGAAGCTTTTGATTTTACAGGAAAGTTGGATTTTGTTGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGGGATCGTATATGTACTGCAGCTGAAATAAGGTACTACTTCCATGGTTTCTTGGCTCAGGGAGCATCAGCTGACAATTATGTAAAACCGAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGATGGGGTTGTAGTACGGGCAAGGATATTGACCTTAAAAAGGACATCAAGGAAATTCCTCAGAGAACCAAAAACTGTCAACCTTGTTGCGAGGGTTTTTTCTGTCCTCAAGGGTTGACTTGTATGATACCTTGCCCACTAGGTTCTTACTGTCCACTTGCAAAACTGAACAACAAGACTGGCGTGTGTGATCCATATAGTTACCAGATACCTCAGGGAGAAATGGATCATACTTGTGGTAGTGCCGATATTTGGTCTGGTGTGGTGAACAATAGTGATATATTCTGTTCTCCCGGATCATACTGCCCAACTACAACACGTAGAGTTTCTTGCGATAGTGGATATTACTGCAGGATGGGTTCTACTCATCAGATGGCATGCTCCAAGTTCAGTACATGTAATCCAAACACAGCAACTCAAAATATGCATGCTTATGGGGCACTTCTTATTGTTGCATTGAGTACTGTCCTGATCTTCATTTATAACTGTTCTGATCAAGTTCTAGCTACACGAGAAAGAAGGAAAGCTAAATCCAGGGAAGCTGCAGCAAGGCAGGTAAGAGAAACTGTACAAGCTCGAGAAAGGTGGAAAATAGCAAAAGATGCTGCTATAAGGAATAAGATGGGAATGCAAGATCAGCTATCCCGCACTTTTTCTCGCAGAAAATCAGTTAAGCAAGGGGAGCAAACAAAGGTTTTCAGTCAAGCTAACCCTGATACGGGAAATTCGCTTTTGCAACCGCCACCAGTACCTCCAGCGCAGTCATCTGCAGCCACAAAAGGGCAAAAGGAACCTAGCAACCTTACTAAAATGATGAATTCACTTGAGAATGACCCTCATAGTAATGAAGGATTCAATCTACAGATTGGGGACAAAAATATTAAAAAGCAGATGCCAAAGGGACGGCAGTTACATACACAAAGCCAAATTTTAAGGTATGCATATGGTCAGATTGAGAAGGAGAAGGCTCAACAAGAGAAAAACAATAACTTAACCTTCTCAGGAATAATTTCAATGGCCCAGGAAGGTGAGGAGGTTGTAACGAGGCCTGTGATCGAAGTAGCTTTCAAAGATTTAACCCTTACTTTGAAAGGGAAAAGGAAACATCTACTAAGGTGTGTGACAGGTAAAATCATGCCTAGTCGAGTTTCAGCTGTGATGGGTCCCTCAGGAGCTGGCAAAACTACATTTCTTTCTGCTCTGGCAGGGAAAACAAGAGGATGCACTATGACAGGCTCAATTCTAATCAATGGAAAACCTGAATCCATTCACTGTTATCAGAAAATTATTGGATATGTGCCACAAGATGATATTGTGCATGGGAATTTGACTGTGGAGGAAAATCTTCGTTTCAGTGCGAGATGCAGACTATCTGCTGATCTGCCAAAACATGATAAGGTTCTGATTGTTGAAAGAGTAATTGAAACCTTGGGGCTCCAGGCAGTAAGGGATTCCCTTGTTGGAACAGTGGAGATGCGAGGCATATCTGGTGGGCAAAAAAAACGTGTAAATGTAGGGTTGGAGATGGTTATGGAGCCTTCATTGTTAATCTTAGATGAGCCCACAACTGGTCTGGACAGTGCATCTTCCACTTTACTTCTGAAAGCACTTCGTCGTGAAGCTCTTGAAGGGGTAAACATCTGCATGGTACTTCACCAGCCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCAAAAGGTGGCCTTACGGCATATCACGGCCCTGTTAAAAAAGTAGAAGAATACTTTGCTGGCATTGGAATCACTGTACCTGATCGTGTGAATCCTCCAGACCATTTTATTGACATTCTAGAAGGTTTAGTGAAACCAAGTACAGGTGTGACTTATCAACAACTACCTGTCAGATGGATGCTTCATAATGGTTACCCAGTACCACCTGATATGCTTCATTATGCTGATGAAATTTCTGCTTCATCATCTTCCTCAAATCCAAATCTTGCGATAAAGGGTGCCGATGAAGCTTCTGATAAATCATTTGCCGGAGAGTTTTGGGAGGATATGAAAAACAATGTTCAGATGCGAAAAGATCATATAGAGGCAACCTTCTTAAAGACTAAAGACTTATCTGACCGAAGAACTCCTGGTGTTGCTCGGCAATATAGATACTACCTTGGGCGGATAGGTAAGCAGCAGCTGCGAGAAGCAAAATCACAAGCGGTTGATTATCTCCTTTTATTAGTTGCTGGTGCTATCTTGGGAACTCTTACTAAAGTAAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATCGCTGTTTCTCTACTTTGCAAGATTGCAGCTCTGAGATCATTTTCTATGGATAAATTACAATACTGGAGGGAGAGTGCATCAGGGATCAGCAATCTAGCTCATTTTTTGTCCAAAGATACAATTGATCTTTTCAGTACAATTGTGAAACCTCTCATTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTATGCAGTTTTGGTATGCCTTGTGTACTGTGTGACTGGCATGGCTTACGCATTAGCAATTTATTTTGAACCTGCTCCTGCTCAGCTGTGGGCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCAAACCAGACAAGAGATAGTACCTTTATGAAGATCCTAGTACAAATGTGCTATCCCAAATGGGCTTTGGAGGCCTTTATTATTGCAAATGCTGAAAGGTATACTGGGGTGTGGCTGATAACTCGCTGTAGTTCACTGATGAATAGCGGTTATAATGTCAGTGATTGGCCTATCTGTCTAGCTGTCCTAATTTTTTATGGTATAGTTGCCAGAGTTGTGGCTTTTATTTGTCTAATAATCACCCAAAAGAAATGA 3288 0.4091 MRNYVPYILLFFFSFTLLLPNIQCADGTFAPSFYTEEIYKELQNIALLLNKDIKSSLGFCIKDPKNDWEEAFDFTGKLDFVDSCVKKKGDFRDRICTAAEIRYYFHGFLAQGASADNYVKPNKNCNLTSWVSGCEPGWGCSTGKDIDLKKDIKEIPQRTKNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNKTGVCDPYSYQIPQGEMDHTCGSADIWSGVVNNSDIFCSPGSYCPTTTRRVSCDSGYYCRMGSTHQMACSKFSTCNPNTATQNMHAYGALLIVALSTVLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKIAKDAAIRNKMGMQDQLSRTFSRRKSVKQGEQTKVFSQANPDTGNSLLQPPPVPPAQSSAATKGQKEPSNLTKMMNSLENDPHSNEGFNLQIGDKNIKKQMPKGRQLHTQSQILRYAYGQIEKEKAQQEKNNNLTFSGIISMAQEGEEVVTRPVIEVAFKDLTLTLKGKRKHLLRCVTGKIMPSRVSAVMGPSGAGKTTFLSALAGKTRGCTMTGSILINGKPESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSADLPKHDKVLIVERVIETLGLQAVRDSLVGTVEMRGISGGQKKRVNVGLEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGITVPDRVNPPDHFIDILEGLVKPSTGVTYQQLPVRWMLHNGYPVPPDMLHYADEISASSSSSNPNLAIKGADEASDKSFAGEFWEDMKNNVQMRKDHIEATFLKTKDLSDRRTPGVARQYRYYLGRIGKQQLREAKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSMDKLQYWRESASGISNLAHFLSKDTIDLFSTIVKPLIYLSMFYFFSNPRSSFGSNYAVLVCLVYCVTGMAYALAIYFEPAPAQLWAVLLPVVMTLIANQTRDSTFMKILVQMCYPKWALEAFIIANAERYTGVWLITRCSSLMNSGYNVSDWPICLAVLIFYGIVARVVAFICLIITQKK 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01876 1095 CDD ABCG_EPDR 488 714 - -
Car04g01876 1095 ProSitePatterns ABC transporters family signature. 631 645 IPR017871 GO:0005524
Car04g01876 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 713 IPR027417 -
Car04g01876 1095 Pfam ABC transporter 510 658 IPR003439 GO:0005524
Car04g01876 1095 Gene3D - 480 726 IPR027417 -
Car04g01876 1095 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 1091 - -
Car04g01876 1095 MobiDBLite consensus disorder prediction 391 418 - -
Car04g01876 1095 MobiDBLite consensus disorder prediction 364 379 - -
Car04g01876 1095 SMART AAA_5 516 708 IPR003593 -
Car04g01876 1095 MobiDBLite consensus disorder prediction 345 418 - -
Car04g01876 1095 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 490 731 IPR003439 GO:0005524
Car04g01876 1095 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 29 1091 - -
Car04g01876 1095 Pfam ABC-2 type transporter 688 1095 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01876 Car-Chr4 20288088 20307104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01876 521 710 Calmodulin-binding Proteins AT2G36910 28.788 1.52e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01876 - - gmx:100812387 1885.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00978 04 9842636 9849995 Car04g01876 04 20288088 20307104 ECH
Car03g02485 03 70666044 70672914 Car04g01876 04 20288088 20307104 ECH
Car04g01876 04 20288088 20307104 Car04g00978 04 9842636 9849995 ECH
Car04g01876 04 20288088 20307104 Car04g01876 04 20288088 20307104 ECH