Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01871 ATGGAGATGGAGGGAGCACTATCCAATGGCCACGCTCAACCGACCTTTTGTCTCACCAAAACTCTTCCCGATCCACTCAACTGGGGTGTCGCCGCTGACTCCATGAAGGGTAGTCATTTGGACGAGGTCAAGCGTATGGTGGAAGAGTATCGTAACCCCATTGTTCGTATTGGTGGCGAGACTCTCACCATTGCTCAGGTTGCTGGAATTGCCTCACATGATAGTGGTGTTCGTGTCGAGCTTTCCGAGTCTGCTAGGGCTGGTGTTAAGGCCAGTAGTGATTGGGTCATGGATAGTATGAACAAAGGCACTGATAGCTATGGTGTTACTACTGGTTTTGGTGCTACCTCTCACCGGAGAACCAAGCAGGGTGGTGCCTTGCAGAAGGAGCTAATCAGGTTTTTGAACGCTGGAATATTTGGCAATGGAACAGAATCAAATTGTACACTACCACACACAGCAACAAGAGCTGCAATGCTAGTAAGAATCAACACTCTTCTTCAAGGCTACTCAGGAATCAGATTTGAAATTCTAGAAGCCATAACCAAACTCCTTAACAACAACATCACACCATGTTTACCACTTCGTGGAACAATCACAGCTTCTGGTGATCTTGTTCCACTTTCATACATAGCTGGTTTACTAACCGGCCGACCGAACTCCAAAGCCGTCGGTCCATCGGGTGAAATTCTCAATGCAAAAGAAGCTTTTGAACTCGCAAGCATCGGTTCCGAGTTCTTTGAATTGCAGCCTAAGGAAGGGCTAGCTCTTGTAAACGGAACCGCTGTTGGTTCCGGTTTAGCTTCGATCGTTCTGTTCGAAGCTAACGTGCTAGCCCTTTTGTCTGAAGTTATGTCAGCAATATTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACTGATCATTTAACTCACAAATTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATAATGGAACATGTTTTAGATGGAAGTGCTTATGTTAAAGCAGCTAAGAAATTGCATGACACTGATCCTTTGCAAAAGCCTAAACAAGATCGTTATGCACTTAGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTTATAAGATTTTCAACTAAGTCAATTGAAAGAGAGATTAATTCTGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAAGCTATTCATGGTGGTAACTTTCAAGGAACACCTATTGGAGTTTCAATGGATAACACACGTTTAGCTCTTGCATCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAACTTGTTAATGATTTTTACAATAATGGGTTGCCTTCAAATCTTTCTGCTAGTAGGAATCCAAGTTTGGATTATGGTTTCAAAGGTGCTGAAATTGCAATGGCTTCTTATTGTTCTGAGTTGCAATATCTTGCTAACCCTGTCACTACACATGTTCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAGGCTATTGAGATCTTAAAGTTGATGTCTTCAACTTTCTTGATTGCACTTTGTCAAGCAATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAACACTGTGAGTCAAGTTGCGAAGAGGACGCTAACGACTGGCGTGAATGGTGAACTACATCCATCCAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGGGAGTATGTTTTTGCATATGTTGATGATCCTTGTCTCTCTACATACCCTTTGATGCAAAAGTTGAGACAAGTGCTTGTAGATCATGCATTGGTGAATGTTGATGGTGAGAAGAATTTGAACACATCAATATTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTTTTGCCTAAAGAAGTTGAAAGTGCAAGAATTGCTTATGAGAATGGACAATGTGGAATTCCAAACAAGATTAAGGAGTGTAGGTCTTATCCATTGTACAAGTTTGTTAGAGAAGAGTTGGGAACAGAGTTGTTGACAGGGGAGAAAGTTATATCACCAGGTGAAGAGTGTGACAAATTGTTTACAGCTATGTGTCAAGGTAAAATTGTTGATCCTCTTTTGGAATGTCTTGGAGAGTGGAATGGTTCTCCTCTTCCAATTTGTTAA 2148 0.4097 MEMEGALSNGHAQPTFCLTKTLPDPLNWGVAADSMKGSHLDEVKRMVEEYRNPIVRIGGETLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELASIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLALLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHVLDGSAYVKAAKKLHDTDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYVDDPCLSTYPLMQKLRQVLVDHALVNVDGEKNLNTSIFQKIATFEDELKTLLPKEVESARIAYENGQCGIPNKIKECRSYPLYKFVREELGTELLTGEKVISPGEECDKLFTAMCQGKIVDPLLECLGEWNGSPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01871 715 Pfam Aromatic amino acid lyase 62 538 IPR001106 -
Car04g01871 715 Gene3D - 528 649 IPR023144 -
Car04g01871 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Car04g01871 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Car04g01871 715 PANTHER HISTIDINE AMMONIA-LYASE 21 715 IPR001106 -
Car04g01871 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Car04g01871 715 CDD PAL-HAL 60 525 IPR001106 -
Car04g01871 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 715 - -
Car04g01871 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Car04g01871 715 Gene3D - 17 261 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01871 Car-Chr4 20206282 20210091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01871 24 715 Monolignol Biosynthesis Gene Families AT2G37040 82.803 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01871 K10775 - gmx:100302735 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00983 04 9882090 9889339 Car04g01871 04 20206282 20210091 ECH
Car03g02481 03 70615306 70619328 Car04g01871 04 20206282 20210091 ECH
Car04g01871 04 20206282 20210091 Car04g00983 04 9882090 9889339 ECH
Car04g01871 04 20206282 20210091 Car04g01871 04 20206282 20210091 ECH