Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01868 ATGTCTTCCTCTGCTGCTTCCTTAGCACTTCCAACTCTCCGAACTAAGCAACCTCTCTGTTCTCCTCAATGTTTCTCTTCACACCCTTCGTTTTCCATTAACCCTAATTTCAAACCATTTTCCATTTCTTCTGCTTCTGTTCGTCCAACCTTGTCGTTGTCTTATCGTTTTGTTTCTCGTGTCGCGGTTTCGTCTGAATTCGACCAGCAAGAGGATACCTTTGATGATGGAGAGACTCCTAATTACTCTTCTAACCTTAGGTTGTTCGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAAATCTTTGAAAACGCTGGAAATGTTGAGATGGTTGAGGTGATTTATGATAAAACAACAGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCGGCTGAAGAAGTTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAAGTGGATGGAAGGGCATTGAGAGTGAATGCTGGACCACCTCCTCCACCTCGTAGTGAGAATTCTCGTTTCGGTGAGAATACTCGTTTCGGTGACAATTCTCGTTTTAGAGGTGGTTCTCCAAGAGGTGGTTCTTCAGATAGTGACAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAACTCGGCACTTGAGTCATTGTTTGGTGGACATGGAACGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGATTTGTAACTTTCAGTAGCCCTGATGAGGTCAACAGCGCTATTCAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATCCGAGTCTCGACAGCAGATACTAGACCAAAGCGTCAATTTTGA 855 0.4433 MSSSAASLALPTLRTKQPLCSPQCFSSHPSFSINPNFKPFSISSASVRPTLSLSYRFVSRVAVSSEFDQQEDTFDDGETPNYSSNLRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAEEVEAAAQQFNGYEVDGRALRVNAGPPPPPRSENSRFGENTRFGDNSRFRGGSPRGGSSDSDNRVHVGNLAWGVDNSALESLFGGHGTVLEAKVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLDGVDLNGRAIRVSTADTRPKRQF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01868 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Car04g01868 284 SMART rrm1_1 87 160 IPR000504 GO:0003723
Car04g01868 284 SMART rrm1_1 201 274 IPR000504 GO:0003723
Car04g01868 284 SUPERFAMILY RNA-binding domain, RBD 82 194 IPR035979 GO:0003676
Car04g01868 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Car04g01868 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Car04g01868 284 SUPERFAMILY RNA-binding domain, RBD 196 283 IPR035979 GO:0003676
Car04g01868 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Car04g01868 284 PANTHER OS02G0815200 PROTEIN 1 284 - -
Car04g01868 284 CDD RRM_HP0827_like 87 160 - -
Car04g01868 284 Gene3D - 61 195 IPR012677 -
Car04g01868 284 Gene3D - 196 284 IPR012677 -
Car04g01868 284 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 284 - -
Car04g01868 284 MobiDBLite consensus disorder prediction 156 201 - -
Car04g01868 284 CDD RRM_HP0827_like 201 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01868 Car-Chr4 20120292 20123141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01868 88 283 Eukaryotic Initiation Factors Gene Family AT3G16380 31.122 3.16e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01868 - - gmx:100786275 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01868 04 20120292 20123141 Car04g01868 04 20120292 20123141 ECH