Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01863 ATGAATACATTAATGGATTCAAGGGAAAATAACAACTCAGAATCAGTGGAAAGGTATTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAAATGCCAACAATTAACAGTAAAGTCTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACATGTTAATTTCAGAAATTGTCCAAAGGTTCCACCTTTGATTCCATGCAAAGTTGTTTCTATCAAGTATATGGCTGATCTTGAATCAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGAGTGGATGTGGAAATGATGATGCTTTTGATTATGAAAATGATAGTGTTGTTGCTGGAGGGATTAGTAATGGTTCTGATAATCAAGATAAGGTTCTTTCATTTGCAAAGACTTTGACTCAATCTGATGCTAACAATGGTGGAGGGTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGACTATGCAGCCGACCCGCCTCTCCAGAACATTTTGGCGAAAGATGTTCATGGAGAGACGTGGAAATTTAGGCATATTTATAGGGGGACGCCGAGACGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCATAAGAAGCTTCTTGCTGGCGACTCCATTGTTTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATAGGTGGTGGACATGAGGATCCATCAGGGTGGAATCCTGCAGGAGAAAATTATCCTTTTCCTTGGTTTACACAGAATGAGAATAAAATGATGAGAAACATTAACAATAACAATAGCAATGGTTTGAACTCAAGTGCGAATATGACCGGGAGGACGAAAGTTAGGCCAGAATCGGTTCTTGAAGCTGTAACTCTAGCTGCTAATAAGCAACCTTTTGAGGTTGTTTATTACCCTCGCGCAAGCACGCCTGAGTTTTGTGTAAAAGCACCCTTAGTAGAAGCGGCAATGCAGATTAGATGGTGTTCCGGAATAAGATTCAAGATGGCCTTCGAAACCGAGGACTCATCTCGAATAAGTTGGTTTATGGGAATTGTTTCTGCAGTTCAGTTTGTTGATCCACTTCTTTGGCCTAATTCACCTTGGAGGCTTCTCCAGGTTAAATGGGATGAACCAGATTTACTACAAAATGTGCGAAGGGTGAATCCATGGTTGGTTGAATTAGTAGCAAATATTCCTTCCATAAACCTTTCACCTTTCTCACAGCCAAGGAAGAAATTGAGATTGTCACAGCATCCCGATTTCCCCCTCGACGGCCAGATTTCGATGCCACCAACATTTCCTAGTAACCTTCTAGATCCTAACAACCTATTCGGCCGTCTACCCGAAAGTACACCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCGTCCGATATCGGATTTCCACCTCAGTAAAGTTCAGTCAGGTCTATTTTCTGCTGGTTTCCTGCCTTTTGATCATGCTGCTACACCGCATAGTGTCTCTAATAACCTAATGTTGCAAAAGTCGAGCGTGAGTGAGAATGTCTCTTGTTTATTATCTATGGCAAGTTCTAACCAGTCTTCGACAAAATTTAACGATGAAAAGAAACCTCAGCTTGTGCTTTTCGGCCAGAAAATTCTCACCGAGCAACAGATCTCTCTAAGCACCTCTGGCGATACCGATACAGTCTCACCGGTTCTTACTCGAAATCATTTACCAGATGGAAATGCTGAAAAAATGAGTAATATTTCTCAGAGTTACCAATGGTACAAAGATAACCGGCGAGAAACCGAGGCGAGTTTGGAGACTGATCACTGTAAAGTTTTTATGGAATCGGAAGATGTAGGTCGGACAATCGACCTCTCTTCGCTCGGATCTTATGATGAGCTATACAGAAAACTGGCAGACATGTTTGGTATAGAAAAACATGAGAAGGTAAATCGCGTGCTCTATCGCGATATATCAGGAGCGGTGAAACACATTGGAGATGAACCATTCAGTAACTTCACGAGAACGGCGAGGAGGTTGACGATTCGAATGGATTCTAGTAGCCACAATGGTGCCAAATAA 2079 0.4233 MNTLMDSRENNNSESVERYLDPQLWHACAGGMVQMPTINSKVYYFPQGHAEHACGHVNFRNCPKVPPLIPCKVVSIKYMADLESDEVYAKLKLVPLSGCGNDDAFDYENDSVVAGGISNGSDNQDKVLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPAGENYPFPWFTQNENKMMRNINNNNSNGLNSSANMTGRTKVRPESVLEAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSAVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVNPWLVELVANIPSINLSPFSQPRKKLRLSQHPDFPLDGQISMPPTFPSNLLDPNNLFGRLPESTPAGMQGARHAHYGRPISDFHLSKVQSGLFSAGFLPFDHAATPHSVSNNLMLQKSSVSENVSCLLSMASSNQSSTKFNDEKKPQLVLFGQKILTEQQISLSTSGDTDTVSPVLTRNHLPDGNAEKMSNISQSYQWYKDNRRETEASLETDHCKVFMESEDVGRTIDLSSLGSYDELYRKLADMFGIEKHEKVNRVLYRDISGAVKHIGDEPFSNFTRTARRLTIRMDSSSHNGAK 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01863 692 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Car04g01863 692 CDD B3_DNA 129 230 IPR003340 GO:0003677
Car04g01863 692 MobiDBLite consensus disorder prediction 560 581 - -
Car04g01863 692 PANTHER AUXIN RESPONSE FACTOR 10 681 - -
Car04g01863 692 ProSiteProfiles PB1 domain profile. 606 686 IPR000270 GO:0005515
Car04g01863 692 SMART B3_2 130 232 IPR003340 GO:0003677
Car04g01863 692 Gene3D - 603 689 - -
Car04g01863 692 Gene3D - 333 407 - -
Car04g01863 692 Gene3D - 127 232 IPR015300 -
Car04g01863 692 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Car04g01863 692 SUPERFAMILY DNA-binding pseudobarrel domain 124 241 IPR015300 -
Car04g01863 692 Pfam Auxin response factor 296 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g01863 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01863 Car-Chr4 20016320 20019820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01863 16 689 B3 DNA Binding Superfamily AT4G30080 56.369 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car04g01863 B3 3.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01863 - - gmx:100796522 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00992 04 10012494 10015164 Car04g01863 04 20016320 20019820 ECH
Car04g01863 04 20016320 20019820 Car04g00992 04 10012494 10015164 ECH
Car04g01863 04 20016320 20019820 Car04g01863 04 20016320 20019820 ECH
Car04g01863 04 20016320 20019820 Car06g03473 06 65262709 65267058 ECH
Car04g01863 04 20016320 20019820 Car01g02504 01 50745831 50749544 ECH