Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01856 ATGCAAATCCCATTTTATAAACCTTCTCAATTATCATCACTCATATTATTCATCCTCTTCTTTTTCTCTCATCGTGCTAATGCTTTTGGCACCATGGGACCAATCTCCGCTTCATTCGGAGAATACGAACTGTTCTGTTCTATCGACGCCAGTGGAAAACAAGACGTTATTTGTTGGGGCAAAAATATAACTTCTCCGCCGCCACTTCCGTCTTCTTCTTACGTTACCAATATTCCTGCCATGGCGGCACTTTCCGGTGGCGAAGGTTTTCTCTGTGGCATTCTAGCAAATACTTCGCAGGCGTTTTGTTGGGCTGCTACTTCAAAACAAAACGCAGATCCTGTTTTGGTTCCTTCGGTTTACCGGAGTACTGCTTACTCCCATATCGCCGCCGGTAAGAATCATGTCTGCGCCGTTAGAGGTTCTTATTACGCCGATCGTGATTCCGGTACCGTTGATTGCTGGCAAATCACCAAAAAAAACGGAACTTTAATGGCGGTGCTCAGTGAATCGTTTGAAGACCAGTCAGTTACTAATCTTGAAATGAACCGTGTTGTTTCCGGCGAAGGGTTCACCTGCGGTGGAGTCAGAGACGGTGGACTTGTTTGTTGGGGACCCAATTCAACAAACTTGAAAGTTTCCAACGTTTCGGATAGTTTCGCGGTTTTAGCTGCGGGGAGAACCGCCGTATGCGGTGTTTCGAATATCTCCGGCGATGTGAGATGTTGGGGTGATATAGAATCTCCGTCGACGGAGATTCGTTTGGTTTCGCTCTCCGGCGGGGCGCGCCATTTCTGCGGCGTTCGAGAGGATAACCATGTTATTGAATGTTGGGGTAATTTGAATTCATCTTTGGTTCCAAAAGGTAATGGCTTTATGGCAATTGCTTCTTCTGATTACACAACTTGTGGTATAAGGGAAGTTGATCTTCTTCTAGATTGTTGGTTGGTCAACGCTTCAAAGCCTGATTTTGACCCTCCTTTGGAGCTTTCAAGTCCTGGTCTTTGCAGGTCAAGTTCTTGTGAAGTTAATGAATTTGATTTCAATGTTAGTGTTCTTAATGAACCAGATTTGACAAGCTTGTGTGTTAGACAGGATTTGAGGATTTGTTCACCTTGTGGTTATAATTGTTCACAAGGTTTCTTTTTGTCTAGTCCTTGTACTCAAAATTCTGATAGAGTTTGCACAGCTTGTTCACTTTGTCAGAATAGTTCTTGTGTGAGTGTTTGTAGACTTCATTCTTCAACTGGGTTTTTGCATTGGCATCATATTCCTAGATGGGTTTTCATAATTGGATCTTCTGTTTTTTGTTTCTTGTTGATTTTGATTTGCGGCTGTATTTTTCGATGTTTGGTTTCTACAAGAGGACAACAACATGGGACAAAGAAACAATCCAAGTCTTGTATTGGTAAAATGGAACAAGAGGATGATGATGTTGGTGTTGTGAATGGTAATGGTCTTCTTCATACTTCACCTTCTGTTGCTTCTTGTCCTGGTTTGCCTCAGGTTTTCAGGCTTTCGGAGTTGAAAGACGCTACAAATGGTTTCAAGGAGTTTAATGAGCTTGGAAGGGGAAGTTATGGATTTGTTTACAAAGCTGCTTTGGCTGATGGGAGAGTTGTTGCTGTTAAGAGAGCGAACGCAGCAACAATAATACACACTAACAATCGCGACTTCGAAATGGAGTTGGAAGTTTTGTGCAAAATCCGTCACTGCAATATTGTAAACTTGTTAGGTTATTGTGCTGAGATGGGAGAAAGGTTGCTTGTTTATGAGTATATGTCTCATGGAACACTTTATGATCACATTCATGGTGGTCTTTCTCCTCTTAATTGGAGTCTTAGGCTTAAAATAGCTATGCAATCTGCAAAGGGTCTTGAGTACCTTCACAAAGAACTATTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCCAACATTCTTTTGGATTCGGAATGGGGTGCTAGAGTTTCAGACTTTGGACTTCTTACTTCAAGCGATAAAGATCTTAACGGCGACTTGGAAAGCGATGTTTACAGCTTTGGGATTGTGTTGTTGGAGATTCTAAGTGGAAGGAAGGCTTATGATAGAGATTTTGATCCACCTAATATTGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGTAAGGCAGCTGCTGTAATTGATCGCAATGTTGCGCTTCCGAGAAACGTCGAACCATTGCTTAAGCTTGGTGATATAGCAGAGCTTGCCGTGAGAGAGAAACCAAGCGAGCGTCCGCCTATGTCGGATATAGCCTCTTGGTTGGAGCAAATTGTGAAGGATGGATTGATCTTATAG 2319 0.4252 MQIPFYKPSQLSSLILFILFFFSHRANAFGTMGPISASFGEYELFCSIDASGKQDVICWGKNITSPPPLPSSSYVTNIPAMAALSGGEGFLCGILANTSQAFCWAATSKQNADPVLVPSVYRSTAYSHIAAGKNHVCAVRGSYYADRDSGTVDCWQITKKNGTLMAVLSESFEDQSVTNLEMNRVVSGEGFTCGGVRDGGLVCWGPNSTNLKVSNVSDSFAVLAAGRTAVCGVSNISGDVRCWGDIESPSTEIRLVSLSGGARHFCGVREDNHVIECWGNLNSSLVPKGNGFMAIASSDYTTCGIREVDLLLDCWLVNASKPDFDPPLELSSPGLCRSSSCEVNEFDFNVSVLNEPDLTSLCVRQDLRICSPCGYNCSQGFFLSSPCTQNSDRVCTACSLCQNSSCVSVCRLHSSTGFLHWHHIPRWVFIIGSSVFCFLLILICGCIFRCLVSTRGQQHGTKKQSKSCIGKMEQEDDDVGVVNGNGLLHTSPSVASCPGLPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEVLCKIRHCNIVNLLGYCAEMGERLLVYEYMSHGTLYDHIHGGLSPLNWSLRLKIAMQSAKGLEYLHKELLPPIVHKDLKSSNILLDSEWGARVSDFGLLTSSDKDLNGDLESDVYSFGIVLLEILSGRKAYDRDFDPPNIVEWAVPLIKQGKAAAVIDRNVALPRNVEPLLKLGDIAELAVREKPSERPPMSDIASWLEQIVKDGLIL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01856 772 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 340 395 IPR001368 GO:0005515
Car04g01856 772 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Car04g01856 772 Pfam Protein tyrosine and serine/threonine kinase 520 667 IPR001245 GO:0004672|GO:0006468
Car04g01856 772 Gene3D Phosphorylase Kinase; domain 1 489 593 - -
Car04g01856 772 ProSiteProfiles Protein kinase domain profile. 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01856 772 PANTHER OS01G0750732 PROTEIN 32 770 - -
Car04g01856 772 SUPERFAMILY Protein kinase-like (PK-like) 493 763 IPR011009 -
Car04g01856 772 Gene3D Transferase(Phosphotransferase) domain 1 672 769 - -
Car04g01856 772 Gene3D Transferase(Phosphotransferase) domain 1 594 671 - -
Car04g01856 772 SUPERFAMILY RCC1/BLIP-II 40 281 IPR009091 -
Car04g01856 772 SMART serkin_6 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01856 772 Gene3D - 81 326 IPR009091 -
Car04g01856 772 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 32 770 - -
Car04g01856 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01856 Car-Chr4 19880416 19883276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01856 11 766 Receptor kinase-like Gene Family AT3G59420 31.114 3.64e-111 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Car04g01856 PK_Tyr_Ser-Thr 2.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01856 - - gmx:100802259 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01856 04 19880416 19883276 Car04g01856 04 19880416 19883276 ECH