Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01854 ATGGGTAATATTGGAAGTAGCGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAACTGGCCGGCGAGTTCATCCACCGGAGACTCCTCCTCCAATGATTCCTCCGTTTCCGGAAGCTAATTCTAACCGATTCGTTTACAATGCCGCCACTACTCCGTATCCTAACTACCCTAATTACTATCCTCCGCCGCCGACAACTGTTCGGGCGCCTTTGCCGGCACCGTATGATCACCATCACCGTCCGGCGATGGACCCGATGTGGAGCCGGTACCCGCCACCGCCACCGGCTCCTTATGTGGAACATCAGAAAGCGGTTACTATAAAGAACGATGTTAACATCAAGAAGGAGACACTGAGAATTGAGCCTGATGGAGAAGATTCCGGAAAATTTCTTGTGTCGTTTACTTTTGATGCTACCGTTTCTGGGAGCATCACTGTACTTTTCTTTGCAAAAGAAGGCGACGGTTGTATCCTTACCCCAATGAAGGAAAATGTTCTTGCACCTGTTACTATAGATTTCCAGCAAGGTCTCGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATCCATTTTTCAATGTTTGAGGAATCTGAGTTATTGAAAGTAGGCGATATGGAAGTCTATCCTATAGCAGTTAAAGCAGATGCATCTTCCAGCAACGAAAATGGATCAAACGAAACTCCAACATCTGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTTCAGGAGATATACGGTATTGGAAATTCAGTTGAGAGTGACTTGGATGGTAATGACCCAGGAAAGGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTGCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAACCTGCGGAGGAGTGA 1047 0.469 MGNIGSSGSNNRRRHGGGGTGRRVHPPETPPPMIPPFPEANSNRFVYNAATTPYPNYPNYYPPPPTTVRAPLPAPYDHHHRPAMDPMWSRYPPPPPAPYVEHQKAVTIKNDVNIKKETLRIEPDGEDSGKFLVSFTFDATVSGSITVLFFAKEGDGCILTPMKENVLAPVTIDFQQGLGQKFKQPAGTGIHFSMFEESELLKVGDMEVYPIAVKADASSSNENGSNETPTSGNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPAEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01854 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 346 - -
Car04g01854 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 340 IPR013083 -
Car04g01854 348 ProSiteProfiles Zinc finger RING-type profile. 291 330 IPR001841 -
Car04g01854 348 SUPERFAMILY RING/U-box 290 336 - -
Car04g01854 348 PANTHER MAHOGUNIN 1 346 IPR045194 GO:0061630
Car04g01854 348 SMART ring_2 291 329 IPR001841 -
Car04g01854 348 MobiDBLite consensus disorder prediction 1 38 - -
Car04g01854 348 MobiDBLite consensus disorder prediction 217 236 - -
Car04g01854 348 Pfam Zinc finger, C3HC4 type (RING finger) 289 335 - -
Car04g01854 348 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 290 330 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01854 Car-Chr4 19817319 19821379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01854 89 310 C3H Transcription Factor Family AT3G09770 66.094 5.02e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01854 - - gmx:100789032 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01854 04 19817319 19821379 Car04g01854 04 19817319 19821379 ECH