Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01852 ATGATGCCAGCTGAAGCTTCCAAGGATAATAACCAAGGTGTTTCCACCATTCAAAATAAAGATGATATCTCAATTCATAAGGGTGCGGCATCATCTGAAATAACTGAGGAACTACCAAGTGGACAACAAAGAACAAAGCAAAACCTTAGCATAGAGACACCAAAAAAAATTCAAGAAGAAGCAAAAGAAGATTTTTTGAGAATAAACATACCTCTAACTCTAACTCCATCGCCAAGAAGAGTAATATTTTCACCTTGTACAAGTCCTGTTTTCATTGAAACCAATGAATCCCCTGGTCCTTCTAGTTCTAAAAATAGATCAACTCTTAAAGCTCTTATTCCTAAACTAAGTTTCAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCTGCTTTCCTTGCACTTGAAGGTTCGTCCAATGTGCCACAGAAAAAGCCTTTTCTTTCGAGGACACTGTCTCGAATCAAACCTCGAGGGAGGAAAACATCTTCTTTACCTGTATCACCGGTTCCCCATTCAAATCCAGTGTCTGTACATGGAGAAAAAGCTTATCCAGCAATGGCTAATGAGAAAGAACTGCAATTACCTATTCATCGTTCGCGATCTGTTCCTGCATTTACCGAGGAAGATACTCCTGTAGGCGGCATGTTTCGTATATTTCGAACCATACCCCAATTGAATGAGAAAATCACCACCGCAGCAATATCTGCAGCATCTCCACCTGGTGAAACAGTTGAAACTGAGAATGGAGGTGAAGATATTCCTGAAGAAGAAGCTGTATGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGGTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTAGCACATAGAGAATGTGCAGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTTTGCAAACAAGAAGTTCAAAACTTACCTGTCACTCTTTTAAGACTTTACCAACCTAACTTGCAACTCAGCAGAGGTCAGCAAGCTGATGAAATTTCTCAATACAGGGTTTGGCAGGATGCTCCTATTCTTGTCATTGTTAACATGTTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTATTTCAAGTATGGGATCAAGTGCTATTGCCATGTCCCTCCCATTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAATCATGTTTGGATTTATGGAACCGTGCAGCTTGGTCTTGTGGTTGTTGATGGACATCTTCTCTACTCAGTTGCTCATATGGAAGCTGTTTTGGCTATACTACTAGCTACATTTGCTGGATTTGGAACTGTAATGTGTGGAACATCTATTCTTATGGAGATTTTGAAGTGGAGGAGACGACGGCTCGCTCAGTCGAACTCGAATCAACAGAACGGCGGTTATCAGGACGCGGTTGTGTCTGATCAATCATCTGCAGCCACTCATCAAACTCAAATTGATTCTCAACATACTGAGAGTAATGTAGGAATCTCCTAG 1512 0.4021 MMPAEASKDNNQGVSTIQNKDDISIHKGAASSEITEELPSGQQRTKQNLSIETPKKIQEEAKEDFLRINIPLTLTPSPRRVIFSPCTSPVFIETNESPGPSSSKNRSTLKALIPKLSFKFKNTTSEIEKAAFLALEGSSNVPQKKPFLSRTLSRIKPRGRKTSSLPVSPVPHSNPVSVHGEKAYPAMANEKELQLPIHRSRSVPAFTEEDTPVGGMFRIFRTIPQLNEKITTAAISAASPPGETVETENGGEDIPEEEAVCRICMVELGEGGDTFKLECSCKGELSLAHRECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLYQPNLQLSRGQQADEISQYRVWQDAPILVIVNMLAYFCFLEQLLISSMGSSAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTVQLGLVVVDGHLLYSVAHMEAVLAILLATFAGFGTVMCGTSILMEILKWRRRRLAQSNSNQQNGGYQDAVVSDQSSAATHQTQIDSQHTESNVGIS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01852 503 SUPERFAMILY RING/U-box 257 312 - -
Car04g01852 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 316 IPR013083 -
Car04g01852 503 SMART ringv_2 260 309 IPR011016 GO:0008270
Car04g01852 503 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Car04g01852 503 PANTHER OS02G0165000 PROTEIN 8 497 - -
Car04g01852 503 MobiDBLite consensus disorder prediction 1 54 - -
Car04g01852 503 CDD RING_CH-C4HC3_MARCH 261 309 - -
Car04g01852 503 MobiDBLite consensus disorder prediction 158 177 - -
Car04g01852 503 MobiDBLite consensus disorder prediction 8 22 - -
Car04g01852 503 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 8 497 - -
Car04g01852 503 MobiDBLite consensus disorder prediction 35 52 - -
Car04g01852 503 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01852 Car-Chr4 19796354 19800689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01852 255 315 C3H Transcription Factor Family AT2G37950 45.161 2.82e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01852 - - gmx:100787963 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01852 04 19796354 19800689 Car04g01852 04 19796354 19800689 ECH