Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01851 ATGCAAATGATTCCCAATGACCCTTTTTCACTATCCACTTCAATTGGAGGGTTTATATCTCAAGAACAAAACACAAACCCTAACCCTAAACCTAATACACCTCCTATTCCCAAGAAGAAGAGAAATCTTCCAGGTACACCAGATCCAGATGCCGAGGTTATTGCTCTCTCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTTAGACAGAGATCCAACAAAGAAGTGAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTTCACCATGACCCTGGAAGAGCACTTGGTGACCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCAGTCCAATCAGATTGGAAAGCTCACACAAAAACTTGTGGTACAAGAGAATACAAGTGTGACTGTGGAACCCTCTTCTCAAGGAAAGATAGCTTCATTACACACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGGTTAACATCAGTTACAACAACAAATTTAAATTTCAAGAATGAAGAAGGTGGTGGTGGTGGTGTTAATACTATGATTGGTTCATCACAATCACAACAACATGGTTTATCACATGGAATACTTGAAAATGTTTCACAGTTTGGTTCACATGGTTTTCATGTAGATTTCAACAACAACAACAATTTGATGATGAATTCAGAGAACCAAAGACCAAGTTTATCACTTTGGTTAAACCAGGGGAATCATAATCAACAAATTTCAGATATGGGACAAAGTTCAGGACTTTTTGGTTCTTCAGGTAATTTATCTGAAATAGTTCAAATGGGAAATGTTAATAACAATAATGGTTTGAGTAATTTTGGTATACCTGTTACTTCAAATTCAACATCATCTGCAAATCTTTCACTGTCTTCAAGTGTTCAAAAGAAGCAATATTCAAAGACTGAATCTGTTTTACCAATGTCAGCTACTGCACTTTTGCAGAAAGCAGCTCAAATGGGTTCAACTAGAAGCACTTCTAGTACTAATAATCCTTCAATTTTTAGTGCTAGTTTTGGTGTAATGACATCATCACCTTCTTCATCTTCTTCTCAAAGTAACACTATCAATAATAGTAGTAGTAATGTCAATGTTAATAACTTTAGCTCAAGTAGTAGTTTTGATCAGTTTTTGATGCAAACAAATAATGGACAAGGAAAGTTTCATTTTTTGCAACATGGTGGTGGTTCTACTTCAAACTCAATGGATCATCAACAGAGTCATTTGACAAGAGATTTTCTTGGTGTGAGTGGAGGAAGAGGGGGTGCAGTTAGTCATCAGTTTCTACCTCATGAGCTTGCAAAGTTTGCTTTGAGCCAATTCACAGGTAATCGCTGA 1473 0.3693 MQMIPNDPFSLSTSIGGFISQEQNTNPNPKPNTPPIPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKTCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKNEEGGGGGVNTMIGSSQSQQHGLSHGILENVSQFGSHGFHVDFNNNNNLMMNSENQRPSLSLWLNQGNHNQQISDMGQSSGLFGSSGNLSEIVQMGNVNNNNGLSNFGIPVTSNSTSSANLSLSSSVQKKQYSKTESVLPMSATALLQKAAQMGSTRSTSSTNNPSIFSASFGVMTSSPSSSSSQSNTINNSSSNVNVNNFSSSSSFDQFLMQTNNGQGKFHFLQHGGGSTSNSMDHQQSHLTRDFLGVSGGRGGAVSHQFLPHELAKFALSQFTGNR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01851 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 483 - -
Car04g01851 490 MobiDBLite consensus disorder prediction 11 51 - -
Car04g01851 490 Gene3D Classic Zinc Finger 119 200 - -
Car04g01851 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Car04g01851 490 PANTHER ZINC FINGER PROTEIN JACKDAW 7 483 IPR033243 GO:0003700
Car04g01851 490 SMART c2h2final6 143 163 IPR013087 -
Car04g01851 490 SMART c2h2final6 108 138 IPR013087 -
Car04g01851 490 SMART c2h2final6 67 89 IPR013087 -
Car04g01851 490 Gene3D Classic Zinc Finger 45 118 - -
Car04g01851 490 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Car04g01851 490 MobiDBLite consensus disorder prediction 11 27 - -
Car04g01851 490 MobiDBLite consensus disorder prediction 28 42 - -
Car04g01851 490 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Car04g01851 490 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01851 Car-Chr4 19786872 19789719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01851 1 482 IDZ Gene Family AT5G03150 47.731 5.00e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01851 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01851 K25870 - gmx:100801182 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01851 04 19786872 19789719 Car04g01851 04 19786872 19789719 ECH