LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01840	ATGGGGAAGACACGTGGAATGGGAGCTGCCCGCAAGTTGAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGGTCATCTCACGCAAAGGGAATTGTCCTTGAAAAGATTGGTATTGAGGCTAAACAGCCCAACTCTGCTATTCGTAAGTGTGCTAGGGTTCAACTCATCAAGAATGGAAAAAAGATTGCTGCATTCGTCCCCAATGATGGTTGCTTAAACTACATCGAAGAAAATGATGAAGTTTTGATTGCTGGATTTGGAAGGAAAGGTCACGCCGTTGGTGATATTCCTGGAGTTAGGTTCAAGGTTGTGAAGGTCTCTGGTGTATCTCTTCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA	429	0.4476	MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01840	142	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	1	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Car04g01840	142	MobiDBLite	consensus disorder prediction	1	30	-	-
	Car04g01840	142	SUPERFAMILY	Nucleic acid-binding proteins	20	140	IPR012340	-
	Car04g01840	142	Gene3D	-	25	142	IPR012340	-
	Car04g01840	142	PIRSF	RPS12p_RPS12a_RPS23e_RPS12o	16	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Car04g01840	142	TIGRFAM	uS12_E_A: ribosomal protein uS12	6	141	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Car04g01840	142	Pfam	Ribosomal protein S12/S23	31	141	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Car04g01840	142	CDD	Ribosomal_S23	26	139	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Car04g01840	142	MobiDBLite	consensus disorder prediction	9	25	-	-
	Car04g01840	142	ProSitePatterns	Ribosomal protein S12 signature.	59	66	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Car04g01840	142	PANTHER	BNACNNG03140D PROTEIN	1	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01840	Car-Chr4	19607484	19609226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01840	1	142	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	95.775	2.17e-96	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01840	K02973		-	fve:101303309	286.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car03g02455	03	70360044	70363434	Car04g01840	04	19607484	19609226	ECH
	Car04g01840	04	19607484	19609226	Car04g01840	04	19607484	19609226	ECH
	Car04g01840	04	19607484	19609226	Car06g03521	06	66214893	66217125	ECH
	Car03g02455	03	70360044	70363434	Car04g01840	04	19607484	19609226	PCT