Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01831 ATGAACTCCAATTCTGATTCAATGTCAACAACACAAACTACTTTTGATCCCAAGAAGGTGAGAAAGCCTTACACTATTACCAAGTCAAGGGAAAGCTGGTCTGATGAAGAACACGACAAGTTTCTTGAAGCTCTTCAActATTTGATAGAGATTGGAAGAAAATTGAAGATTTCGTAGGTTCCAAAACTGTTATTCAGATTCGAAGCCATGCTCAAAAATACTTTTTAAAGGTTCAAAAAAATGGAACACTTGCTCATGTGCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAGGCTACCAAAAATGTTTTGGTGCCATTAGTACCAGCATCCATTGCTTATGGATCTTCCACAAATACCCTTGTACCTCCTGGGTATGTAGCATGGGATGAAACTTCCTTGCTCTTGAATACTGAATCCATCATATCCAGCACTAATTGTCAGGATGAACTCAACAATCTTCAGGGAAATGAAGCTGATATTGGTGGATCAAAGGGGATTAGCAACAGTGGTCTTAGTGGTGTTGGGGACTCTACTACAAGGTCTCAGATACCAAAACAAGGGAAACAAAATCCTGTGTTACATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGACCCGGATACAAACGGCCATGTGCAGAAGTTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTATCAACTTGTCTAGCCCTAATTTTGAGCCCATTAAGAAGGCATTGTCAACATATGATGAGAATGACGATGTTGCAGTAGGAGTTACTGCAGGAGTTGATGTCAAGAAGCAGACAAATGATGTAGCATGTCAAACCACTTAA 879 0.3959 MNSNSDSMSTTQTTFDPKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLVPASIAYGSSTNTLVPPGYVAWDETSLLLNTESIISSTNCQDELNNLQGNEADIGGSKGISNSGLSGVGDSTTRSQIPKQGKQNPVLHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTINLSSPNFEPIKKALSTYDENDDVAVGVTAGVDVKKQTNDVACQTT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01831 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 79 IPR017930 -
Car04g01831 292 Gene3D - 33 80 - -
Car04g01831 292 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Car04g01831 292 CDD SANT 32 75 IPR001005 -
Car04g01831 292 PANTHER PROTEIN REVEILLE 8 4 286 - -
Car04g01831 292 MobiDBLite consensus disorder prediction 1 18 - -
Car04g01831 292 ProSiteProfiles Myb-like domain profile. 25 75 IPR001005 -
Car04g01831 292 MobiDBLite consensus disorder prediction 172 194 - -
Car04g01831 292 SMART sant 29 77 IPR001005 -
Car04g01831 292 PANTHER SWI/SNF COMPLEX-RELATED 4 286 - -
Car04g01831 292 ProSiteProfiles SANT domain profile. 28 81 IPR017884 -
Car04g01831 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 28 77 IPR006447 GO:0003677
Car04g01831 292 MobiDBLite consensus disorder prediction 1 22 - -
Car04g01831 292 MobiDBLite consensus disorder prediction 172 195 - -
Car04g01831 292 Pfam Myb-like DNA-binding domain 30 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01831 Car-Chr4 19481971 19486321 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car04g01831 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01831 - - gmx:100797466 430.254