LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01830	ATGCCTCCAAAGCAGCAATCTAAAGCTGATGTAGCGAAGAAGCAGAAGGTTGTTGAGGACAAAACTTTCGGTCTCAAAAACAAAAACAAAAGCAAACAAGTCCAGAAATATGTTCAGAATCTCAAGCAATCTGTTCAGCCCAAAATCGATCCCAAAACCGATGCCAAGaaaaagaaggaggaagagaaggccaaggagaaagagCTGAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTTCCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCCAAGGGTTTCAAATGCAAATTCTCTCATGATTTGAATATTCAGAGGAAAGGGGAAAAGATTGATATTTACAGTGATAAGCGCGATGAGGATACTATGGAAGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACTGACATTGTATGTAAACACTTTTTGGATGCAGTAGAGAGAAAGCAATATGGTTGGTTTTGGGCCTGTCCTAATGGTGGTAAGAATTGCCACTATAGACATGCACTTCCACCTGGGTATGTTTTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAGTCTGATAAAATAACAATCGAGGAGGAGATTGAGAACCAGCGTGCCCAAGTTAAAACTATAACTCCTATTACACCTGAGTTATTCTTTCAATGGAAGAAGAAAAAGATGGATGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCTGAGAGAGCTAAGAATGACCGCATGAGTGGTCGTGAGCTGTTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGATAAGTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTTCTAATAATGGTCCCAGCACCTCATCAACAGGtggtgctgatgatgatgaacttcccgatgacattgatgacgatgatgatgaATTGGACTTGGATGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATAAAGGAAGCAGGAACTGAAGCTTAA	1089	0.3765	MPPKQQSKADVAKKQKVVEDKTFGLKNKNKSKQVQKYVQNLKQSVQPKIDPKTDAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNIQRKGEKIDIYSDKRDEDTMEDWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWACPNGGKNCHYRHALPPGYVLKSQMKALLEEESDKITIEEEIENQRAQVKTITPITPELFFQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPEPDETEQNGTGSASNNGPSTSSTGGADDDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEAGTEA	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01830	362	MobiDBLite	consensus disorder prediction	290	336	-	-
	Car04g01830	362	MobiDBLite	consensus disorder prediction	300	320	-	-
	Car04g01830	362	SUPERFAMILY	CCCH zinc finger	87	112	IPR036855	GO:0046872
	Car04g01830	362	ProSiteProfiles	Zinc finger C3H1-type profile.	87	114	IPR000571	GO:0046872
	Car04g01830	362	MobiDBLite	consensus disorder prediction	49	63	-	-
	Car04g01830	362	Coils	Coil	52	72	-	-
	Car04g01830	362	Coils	Coil	207	227	-	-
	Car04g01830	362	Gene3D	-	86	202	-	-
	Car04g01830	362	ProSiteProfiles	Zinc finger C3H1-type profile.	157	195	IPR000571	GO:0046872
	Car04g01830	362	Gene3D	-	203	278	-	-
	Car04g01830	362	Coils	Coil	341	361	-	-
	Car04g01830	362	PANTHER	ZINC FINGER-CONTAINING PROTEIN P48ZNF	1	361	-	-
	Car04g01830	362	MobiDBLite	consensus disorder prediction	321	336	-	-
	Car04g01830	362	Pfam	DRG Family Regulatory Proteins, Tma46	214	295	IPR032378	-
	Car04g01830	362	SMART	c3hfinal6	87	113	IPR000571	GO:0046872
	Car04g01830	362	SMART	c3hfinal6	157	194	IPR000571	GO:0046872
	Car04g01830	362	MobiDBLite	consensus disorder prediction	40	63	-	-
	Car04g01830	362	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21	1	361	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Car04g01830		DFRP_C	3.2e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01830	-		-	gmx:100778701	562.762

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01830	04	19445732	19451679	Car04g01830	04	19445732	19451679	ECH