Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01827 ATGACTAGGGGTATCCGGATGAGTGTTGATGGTGACAGTAATGAACTTACTCAGCGTTTGCAAGATGGGAAAAACAACTTAAAAGAAGGAGTTGATGGTAAGGAACACGGTTTACACGAGGGTGATGAAGTGAAGTGTAATGGAGTAGCTGAAGGAGTTAAGGTTGGAGAAGGAGGGAATGGGGAATCCTCTTCTGTTCAACAGCAAGTACTGCAACAACAGCCTCAAGGGGCAATTATTTGTTGGGAGAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTTGTGGAGTATGATGACTGTACACGTCATATTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGTAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTAGCAATGCCAGGCTTGTCAGGCATTGCTCTTCTATACAAGATTATGGGCCACAACACACGGAAAAATGTTCCAGTAATTATGATGTCAGCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTATGGCAGCACGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGCGGCACACAAACCCAAAAATCTGTGAAATTAAAGAGTCTCGAGAAGTTTGATAACAATTCTGGAAGCAATGACGAGGAAGATAATGGAAGTACAGGTTTGAATAACGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCCTGGACCAAACAAGCTGTAGAAGTTGACAGTCCTAAACCAGTCTCTCAGTGGGATCAGATAGCTGAGGGTCCAGAAAGCACTTGTGCTCAAGTTATTCACTCCAATGCTGAAGTTTGTAGGAACAAGATGGTTCCTCCAGTTATAAAGGAGTGTCCAGAACAAAAAGAACAAATAGTCAAAACTGCAGGTTCAAAACATATCAGCACACTTGATGTGGGTCCCTCTACATTCAATGAGCAAATTAATAGAGGACAACTGGACCTTAATTGTGAAAATCAATCTGGCAAACTAAGGTGCAAAGGGCTTTCATTATCTGATGCTGTGACTAGCACTTCTGATTCTCAAATGAGAAGCGGAGAAATTGAACCCCTAAATAGAAGATCCAAGTCCTCAGATATTGAAAATAAAGGTACTAATAATGTTGAAGAGCTGCTATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTGAAGAAGCTGTTACTACAGTTCAGGATGAACGAAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAGGTACAATGCGGCCTTTAATGGTAAGAAGTCTCCCACCGGATGTGTCGGAAGCAACTCTCCGCAAAATAACAGCTTAGAAGTTACAAAGAAAAATTCATCTTGTGACGATCAATCTCATTCTAGTGGCAACCCTCCTAACCAGAACTCAAATGATGCTAGCAATAACAATGATATGGGCTCTACTACTAATAATGCTTTTATTAAATCTGCAGTTATAAGTGAGCCAGCAGTGGTATCAACAACCAAATTTTTGTGCCAAACATCTGCTTTCCAGCTCATAAAGAACAGTCTCACGTGTACCTCTCAACAAGATGTCTTACATAATACTGAAGATATGACAACAACAATGCTGGCACCACCTAAAGTTGACACTCATAAGGATTCTGCAACTCAGGACTTTGAAGATATGACAACAACAATGCTGGCACCACCTAAACTTGACACTCATAAGGATTCTGCAACTCAGGATTTTCATCGCCATTATGAAAACCATAACTATATTGCTAACATGCAGCATCAATTGCCACCTGAGCATGATGCTGAATCTTTAAAGAAAATGACTTCCGTTGCTCCACACTTTGGGTCATCAAATGTGGTTGAAGTACTAGTTGAAGGTAATATGGGAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGTAATGCAATTAATGCTGCAGGGACAAACATAGAAAGCAACAATGGACTCACTGGGAATagtggcagtggtgatgctagtgggagtggaagtgCCAACAGAGTAGATCAAAACAAGAATTCTCAAAGGGAAGCAGCCCTGGCTAAATTTCGCCAAAAAAGAAAGGAGAGAGAAGAAAGGTGTTTTCATAAAAAGGTTCGATATCAGAGTAGAAAGAAATTAGCTGAACAACGACCGCGATTTCGTGGGCAATTTGTGCGACAGTCCTCAAACGATAATGCAAGTGAGGCGACAGATAGTTGA 2346 0.4015 MTRGIRMSVDGDSNELTQRLQDGKNNLKEGVDGKEHGLHEGDEVKCNGVAEGVKVGEGGNGESSSVQQQVLQQQPQGAIICWERFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIVAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIALLYKIMGHNTRKNVPVIMMSAHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKLKSLEKFDNNSGSNDEEDNGSTGLNNGDGSDNGSGTQSSWTKQAVEVDSPKPVSQWDQIAEGPESTCAQVIHSNAEVCRNKMVPPVIKECPEQKEQIVKTAGSKHISTLDVGPSTFNEQINRGQLDLNCENQSGKLRCKGLSLSDAVTSTSDSQMRSGEIEPLNRRSKSSDIENKGTNNVEELLSLELSLKRLRGVEEAVTTVQDERNVLRHSDLSAFSRYNAAFNGKKSPTGCVGSNSPQNNSLEVTKKNSSCDDQSHSSGNPPNQNSNDASNNNDMGSTTNNAFIKSAVISEPAVVSTTKFLCQTSAFQLIKNSLTCTSQQDVLHNTEDMTTTMLAPPKVDTHKDSATQDFEDMTTTMLAPPKLDTHKDSATQDFHRHYENHNYIANMQHQLPPEHDAESLKKMTSVAPHFGSSNVVEVLVEGNMGNYSINRSASGSNNGSNGQNGSSNAINAAGTNIESNNGLTGNSGSGDASGSGSANRVDQNKNSQREAALAKFRQKRKEREERCFHKKVRYQSRKKLAEQRPRFRGQFVRQSSNDNASEATDS 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01827 781 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 33 758 - -
Car04g01827 781 SUPERFAMILY CheY-like 89 215 IPR011006 -
Car04g01827 781 MobiDBLite consensus disorder prediction 379 408 - -
Car04g01827 781 MobiDBLite consensus disorder prediction 461 513 - -
Car04g01827 781 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 758 IPR045279 GO:0009736
Car04g01827 781 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Car04g01827 781 MobiDBLite consensus disorder prediction 246 277 - -
Car04g01827 781 SMART REC_2 91 206 IPR001789 GO:0000160
Car04g01827 781 CDD psREC_PRR 93 196 - -
Car04g01827 781 MobiDBLite consensus disorder prediction 666 781 - -
Car04g01827 781 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Car04g01827 781 Gene3D - 90 245 - -
Car04g01827 781 ProSiteProfiles CCT domain profile. 727 769 IPR010402 GO:0005515
Car04g01827 781 MobiDBLite consensus disorder prediction 764 781 - -
Car04g01827 781 MobiDBLite consensus disorder prediction 666 726 - -
Car04g01827 781 MobiDBLite consensus disorder prediction 727 746 - -
Car04g01827 781 Pfam CCT motif 724 769 IPR010402 GO:0005515
Car04g01827 781 MobiDBLite consensus disorder prediction 238 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01827 Car-Chr4 19409963 19426812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01827 167 771 Response Regulator Gene Family AT5G02810 43.876 2.78e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Car04g01827 Response_reg 3.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01827 K12129 - gmx:100796933 1069.3