Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01819 ATGGAAGAAACAACAGCAACCATCATGGCTTCACTTTCAACCCTCACTCCATCTCACCTCACACATCTCACTAACTCAATTCTCTCGTCAACTCGCCGCCACCACCGCCGTCTCACTTTCCTCCTCTCTTCCCCAACTCTCTTTTCACTAACCCTTCATCACCTCCACACTCTCTCTCTCCCCCAAAAGTCTCTCCTCATTTCCCGCCATCTTCTTTCCTCTCTCCACCTCCTCACTCGCCACATCCAATCAAACTACGCCACGTCACCTAAACCGCTTCCACCTCCAATCTCAACCTCTTTAACAGAGCGTGAACTCGACGCAGTTTTGCTCCTTCTCATGCTCTGCGAAACACATAAACATAACCCCGAAGCACTTAACGCACCGTTTTGTAATTGGAGGGTGAATTTAAGAAATGTTTTCTCCGTTACATTGTTGACGGTTTCTTCTTATTCTGCGCCGCCGCTTGGTGCTTGTTTGGGATCTGTTTTGATTCCGTTTGTTGAGATGGTGAGTCGGTGTTGGAGATTGGTGGGAGTTTTGGGTTGTGACGGTCGTGATGAAGGGGGGAAGGGAGTTAAGGAGGTGGCAGCTTCGGCGGCGACGGTGGTGGCTTTACCGGCGGTGGAGGTGAGTGTTGGTGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGGTCTGTATTTTGCCCTGGCTTGGGAAAAGGAACACGTGTCCTTGCTGTAGGTTTCGGTTACCGTCAGATGATGTATTTGGGGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATAGGCGAAAAAAATTATAGAATGCTGAATTAA 873 0.4903 MEETTATIMASLSTLTPSHLTHLTNSILSSTRRHHRRLTFLLSSPTLFSLTLHHLHTLSLPQKSLLISRHLLSSLHLLTRHIQSNYATSPKPLPPPISTSLTERELDAVLLLLMLCETHKHNPEALNAPFCNWRVNLRNVFSVTLLTVSSYSAPPLGACLGSVLIPFVEMVSRCWRLVGVLGCDGRDEGGKGVKEVAASAATVVALPAVEVSVGGRECVICKDEMRVGRDVCELPCQHLFHWVCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGEKNYRMLN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01819 290 Pfam Ring finger domain 217 259 IPR001841 -
Car04g01819 290 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Car04g01819 290 SUPERFAMILY RING/U-box 214 264 - -
Car04g01819 290 SMART ring_2 218 258 IPR001841 -
Car04g01819 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 265 IPR013083 -
Car04g01819 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 283 - -
Car04g01819 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01819 Car-Chr4 19283436 19285067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01819 2 283 C3H Transcription Factor Family AT5G02750 51.712 1.98e-81 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01819 - - pvu:PHAVU_007G161400g 344.739