Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01806 ATGGCGGCTGCTTCATTCAATGTTACAACAACACCGCTTTTTTCACTGTCATCAAATGTCGCAGAAGCAAGAATTAGAGCTCTGAACCCTAACCCTAACAGTATCGCCATCGGTGTGAGGGGATTTGGCGGCGGTGTGAAACTTCAACAACAGAATTGGAATGTTAATGCTGCTGCGAGAGTGAGGAAAACAATGAAAGTGAGGGCGGGCAGTAGCTCATCAGAGGAAGAAGTAATAGTACAGTCAAAAGTGACTCATAAAGTATACTTTGACATCAGTATTGGAAATCCAGTTGGGAAACTGGTGGGAAGGATTGTGATTGGATTGTATGGTGACGATGTCCCCCAAACTGTAGAGAACTTCCGTGCTCTTTGCACCGGAGAGAAGGGCTTTGGATACAAGGCCTCCTCCTTCCATCGTGTCATCAACCAATTCATGATTCAAGGGGGCGATTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGACGAGAATTTCAAACTGTCTCATACTGGACCCGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAATTCTTCATCTGCACCGTCAAGACACCATGGTTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCTCAGGAGACAGATCGCGGTGACCGTCCCAGAAAGAAGGTGGTTATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 762 0.4541 MAAASFNVTTTPLFSLSSNVAEARIRALNPNPNSIAIGVRGFGGGVKLQQQNWNVNAAARVRKTMKVRAGSSSSEEEVIVQSKVTHKVYFDISIGNPVGKLVGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKASSFHRVINQFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISDSGELPIA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01806 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 249 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 55 250 - -
Car04g01806 253 CDD cyclophilin_ABH_like 86 248 - -
Car04g01806 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 208 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 224 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 MobiDBLite consensus disorder prediction 231 253 - -
Car04g01806 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 246 IPR002130 GO:0000413|GO:0003755
Car04g01806 253 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 55 250 - -
Car04g01806 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 133 150 IPR020892 GO:0003755|GO:0006457
Car04g01806 253 Gene3D - 75 253 IPR029000 -
Car04g01806 253 SUPERFAMILY Cyclophilin-like 81 250 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01806 Car-Chr4 19093912 19095536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01806 103 244 U-box Gene Family AT5G67530 48.252 3.29e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01806 K03768 - gmx:100777088 351.673