Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01797 ATGTAtcgtcctccttcgtcttcggcttcttcctcctcctcttcgtctCAACAACAGACCTCTTCCCTCACCAGATACGGTTCTGCACCTGGCTCTCTTCTCACCACCACGGTCGATGCCGTCATAGCATCAGGAGGATCGCGCCTTTTCCCCCCGGGAACGGGACATTATTTCTCCGGTGACTCCACTCAGCAGAGGTCATCTTCTTCTTCATACGACGCCTTTGATGGATCGGCGTTGCTCCGTCAGAAAAGCTCCCCCGCAGGTTTCCTCAACCATCTCGCCGCTCACAATCATAATGCGGGGTTCACAATCACAAGGGGAGATGGAGGACAAGGGCAAGAATGTCTTTCTCGCATATCTGAAAATGGTCCACCTTCTTCTTATGCCGCTACAGCAGCAAATAATGGAGGATTGCATCATAGTACCTGGGGGGCTGATAATTCAAATAATAATTCTAATTCGATAGTATTTTCTTCAAATAATAAGCGTTCTAGAAATGACAACAACAATAACAACGACGACGAAGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGTATAGTCTGCCACAAACATCTCTTGAAATGGCAAGCGTTGACAAGCTATTGCATATTCCACAAGATTCCGTCCCTTGTAAAATTCGTGCCAAGCGTGGCTGTGCCACTCATCCCCGTAGTATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATTCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGGAGAACTTGAAAACTGCAGTTGTGGATGCAAACCTAGCACATAA 894 0.4351 MYRPPSSSASSSSSSSQQQTSSLTRYGSAPGSLLTTTVDAVIASGGSRLFPPGTGHYFSGDSTQQRSSSSSYDAFDGSALLRQKSSPAGFLNHLAAHNHNAGFTITRGDGGQGQECLSRISENGPPSSYAATAANNGGLHHSTWGADNSNNNSNSIVFSSNNKRSRNDNNNNNDDEDPDLLLHCLNALETQYSLPQTSLEMASVDKLLHIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHGELENCSCGCKPST 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01797 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983
Car04g01797 297 Pfam Helix-loop-helix DNA-binding domain 230 276 IPR011598 GO:0046983
Car04g01797 297 PANTHER TRANSCRIPTION FACTOR BHLH129 26 289 - -
Car04g01797 297 CDD bHLH_AtbHLH_like 230 282 IPR045239 -
Car04g01797 297 Gene3D - 226 292 IPR036638 GO:0046983
Car04g01797 297 SMART finulus 231 281 IPR011598 GO:0046983
Car04g01797 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 289 - -
Car04g01797 297 MobiDBLite consensus disorder prediction 141 178 - -
Car04g01797 297 MobiDBLite consensus disorder prediction 1 29 - -
Car04g01797 297 MobiDBLite consensus disorder prediction 141 167 - -
Car04g01797 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 291 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01797 Car-Chr4 18962030 18965369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01797 23 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 40.884 1.23e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01797 HLH 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01797 - - mtr:MTR_1g116790 354.369