Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01791 ATGATTAATTCAAACTCTGATGTTAATGGAGGCTATGAAACTTCACATTCTAGTAATCAAATTAATTATTCTACAAAACGTGCAAGGCATGAAGTAGAGGTTGGGAGGTGTGAAAAGTTCAAAGGTGTTGTGCCTCAACCAAACGGGAATTGGGGCGCACAAATATATGCAAAGCACCAAAGAATATGGTTAGGGACATTCAAATCTGAAATAGAGGCTGCAATGGCTTATGATAGTGCCACCATCAAGCTTAGAAGTGGAGAAAGCCACAGAAACTTTCCATGGAATAATCAAACAGTACAAGAACCTCTATTTCAAAGCCATTATAGTTTACAAATTGTGTTGAACATGATTAGAAATGGAACCTACCAATCTATATTTTCCACATTTCTTAACACTCAAAACCAAAGCCACTTTACAAATAATGGGAATTTAGGAGTGAAAGGTGAAGAAGAGTTTTCTTGCACAAAACTTTTCCAAAAAGAATTAACACCTAGTGATGTTGGCAAACTTAACAGGCTTGTTATCCCCAAAAAACATGCACTTACCTATTTTCCTTGTGTTTGTGGAAACAATGTAAAAAATGATGAAGAGTGTAATTATGACGTGGAGGTTGCATTTTATGACAAACTCATGCGATTGTGGAAGTTTCGTTATTGTTATTGGAAGAGTAGTCAGAGCTACGTGTTCACTAGAGGATGGAATCGGTTTGTGAAAGATAAGAAACTAAATGCCAAAGACACCATTGTGTTTTATTTGTGTGAGCCTATAAATTTCACAAAAGGAGGAGAGAGACAAGTGTTTTCCATGATTGATGTAATCTATAATAATGATGGTGATAGAATATTAAGACATTCTATTGAAAATAAGAGAGATGTGGATGTCAAACATATTTTGGGAAAAAGATTAGTTTACAATGAAATAGATGATGACGTGGATGATCAACACGATCGAGATACAATAGATTTAAATGTGTTTCATTCCACATATATTAATTCACCTAGAGGTTTAAGGCTATTTGGTGTAAGTATTAACTGA 1038 0.3468 MINSNSDVNGGYETSHSSNQINYSTKRARHEVEVGRCEKFKGVVPQPNGNWGAQIYAKHQRIWLGTFKSEIEAAMAYDSATIKLRSGESHRNFPWNNQTVQEPLFQSHYSLQIVLNMIRNGTYQSIFSTFLNTQNQSHFTNNGNLGVKGEEEFSCTKLFQKELTPSDVGKLNRLVIPKKHALTYFPCVCGNNVKNDEECNYDVEVAFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLNAKDTIVFYLCEPINFTKGGERQVFSMIDVIYNNDGDRILRHSIENKRDVDVKHILGKRLVYNEIDDDVDDQHDRDTIDLNVFHSTYINSPRGLRLFGVSIN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01791 345 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 9 345 - -
Car04g01791 345 MobiDBLite consensus disorder prediction 1 25 - -
Car04g01791 345 Pfam B3 DNA binding domain 159 254 IPR003340 GO:0003677
Car04g01791 345 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Car04g01791 345 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Car04g01791 345 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Car04g01791 345 ProSiteProfiles B3 DNA-binding domain profile. 159 274 IPR003340 GO:0003677
Car04g01791 345 CDD B3_DNA 157 253 IPR003340 GO:0003677
Car04g01791 345 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Car04g01791 345 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Car04g01791 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 345 IPR044800 GO:0003700
Car04g01791 345 Gene3D - 154 269 IPR015300 -
Car04g01791 345 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Car04g01791 345 SUPERFAMILY DNA-binding pseudobarrel domain 156 259 IPR015300 -
Car04g01791 345 SMART B3_2 159 274 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01791 Car-Chr4 18901846 18902883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01791 39 310 RAV Transcription Factor Family AT1G50680 52.249 4.76e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Car04g01791 B3 1.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01791 K09287 - gmx:102660503 365.925