Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01758 ATGGCATCAGCATCGTGTGTTATTAAGAATCCATTACCTATGAAAGAGACAGCTATGAGCTATGGTGAATATCCTTCTCCTATGGCAACATATGAGGAGGTTGTAGATAATCCCAAGCTCTTCATGCTTAGCTTGGAGAAGCTTCACGCCCTAATGGGCACCAAGTTCATGATTCCCGTTATTGGGGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAAGAGAGAAAATGGAAAGACGTGACTTCAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGTTACGAAAGTACTATACTTCATTACTCTACCACTACGAACAAATTTATTATTTTAAAGCTCATGATTGGACCCATACACCATCCGATGCTTTGCAAAGTCAATCACCCATCCCAGTTCCCGCTCCAAAGATGCAGCAGTTTATGCATCCTTCATCTGAAGTTCAACCTGCTGTCTTTCAACAGTTAAATGCTAATGCTGCTAGATTGCCTGAAGCAATGGCATCATCTTCGGCAGGGTCTCCAGTTGTTGGGGTCATTGATGGGAAGTTTGACAGTGGATATCTAGTTACTGTCACAATCGGTTCAGAGAAACTTAAAGGCGTACTTTATCAAGCTCCACAAAATCCTGTGTTGCCAGCATCTCACCATAGTGCTTCAACTAACAACAACAATGTGACTGGCTCAGTGGGTGTTCATCGTCGCCGACGCAGAAAGAAATCAGAAATGAAAAGGAGAGATCCTGCTCATCCTAAACCAAACAGAAGTGGATACAATTTTTTCTTTGCAGAACAGCATGCAAGGCTAAAACCCCTTAATCAAGGGAAGGACAGAGAGATCAGTAGGATGATCGGTGAACTATGGAACAAGTTAAATGAATCCGAAAAAGCAGTTTATCAAGATAAAGCCATGAAGGACAAAGAGAGATACAGAGCAGAAATGGAGGATTATCGTGAAAAGTTGAAGATGGACCAAGTGATCAGCAATGCTGTGCCACTTCAACAGCGACTTCCCGAAGTGGATACTGACATGCTGAATGCTGACATGAAATTGGATGAAGCTGAAGCAGATTCTCCTCAAACCCCGGAGGAGAGCAGTTCCGGTGGAAGTGAGTATGAAGATGATAAAGCTATGGAGAAAGATTATAGTATGGATGCATTGCCTGTCATAGGAGTTGGAGCTGAATCTATGAATTCAAACGAGAAGTCATCTAAGGGGGGTTTATGA 1272 0.423 MASASCVIKNPLPMKETAMSYGEYPSPMATYEEVVDNPKLFMLSLEKLHALMGTKFMIPVIGGRELDLHRLFVEVTSRGGIEKIIKERKWKDVTSVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKAHDWTHTPSDALQSQSPIPVPAPKMQQFMHPSSEVQPAVFQQLNANAARLPEAMASSSAGSPVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSASTNNNNVTGSVGVHRRRRRKKSEMKRRDPAHPKPNRSGYNFFFAEQHARLKPLNQGKDREISRMIGELWNKLNESEKAVYQDKAMKDKERYRAEMEDYREKLKMDQVISNAVPLQQRLPEVDTDMLNADMKLDEAEADSPQTPEESSSGGSEYEDDKAMEKDYSMDALPVIGVGAESMNSNEKSSKGGL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01758 423 MobiDBLite consensus disorder prediction 229 245 - -
Car04g01758 423 CDD HMGB-UBF_HMG-box 266 330 - -
Car04g01758 423 PRINTS High mobility group (HMG1/HMG2) protein signature 298 317 - -
Car04g01758 423 PRINTS High mobility group (HMG1/HMG2) protein signature 317 337 - -
Car04g01758 423 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 403 - -
Car04g01758 423 SMART ARID_2 32 122 - -
Car04g01758 423 Coils Coil 315 335 - -
Car04g01758 423 MobiDBLite consensus disorder prediction 246 260 - -
Car04g01758 423 SMART hmgende2 265 334 IPR009071 -
Car04g01758 423 SMART bright_3 36 127 IPR001606 GO:0003677
Car04g01758 423 Gene3D High mobility group box domain 250 346 IPR036910 -
Car04g01758 423 SUPERFAMILY ARID-like 34 133 IPR036431 GO:0003677
Car04g01758 423 MobiDBLite consensus disorder prediction 229 273 - -
Car04g01758 423 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Car04g01758 423 SUPERFAMILY HMG-box 254 337 IPR036910 -
Car04g01758 423 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Car04g01758 423 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Car04g01758 423 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Car04g01758 423 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 403 - -
Car04g01758 423 MobiDBLite consensus disorder prediction 366 423 - -
Car04g01758 423 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Car04g01758 423 Gene3D - 28 138 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01758 Car-Chr4 18423601 18429107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01758 1 415 ARID Transcription Factor Family AT1G04880 58.685 6.93e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car04g01758 ARID 3.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01758 - - gmx:100783284 625.55