Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01735 ATGGCGTCGGTGATTATGCTGCCGTACGGAGATGTGGATTCCACTTTGAGGGCAATCGCCGGTCGTGCTGAGGGTTTCGGCCGCCTCGCTATTGGTGGCCTCCACGGTCCTCTCTATTTGGTTACCTCCCTTGCAGATGATGGTCCTGGTTCACTTCGTGAAGGGTGTCGTAGAAAGGAGCCGCTATGGATTGTTTTTGAAGTTTCAGATGGGATTCAAATAAAACCAAATTCTAGGAATATATGGATAGATCGTTGCAGTCTCCGAGATTATGATGATGGGCTTATAGACATTACAAGACAAAGCACGGATATCACTATATCTAGATGTCACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTGGATGATAGATGCATCCGGGTGACGATCCATCATTGTTTCTTTGATGGAACGCGGCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAATAATTACACCAGAAACTGGGCAATATATGCAGTTTGTGCTAGCGTTGAGTCTCAGATATACTCCCAATGCAACATATATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCAGCTGACAGAGAAGAACAGAAGTCTGGTATGACAATATCTGAAGGAGACATGTTACTGAATGGTGCTCAGCCATGCTTGTCAACAGAATACAAAGAAGAATCCATGTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTCAGAGAGGCCAATAGTCGTGTCACGTGTGTAAGAACGACTTATTCATTTGTAGGCCGTGGTAGGAACGTCTTGGGACATGAGATTGGCATAGTTGCCGTGAAACCAGAGAGACCAAACATTGCAAGTTATCATTGTTTTTTTGTAACAGATCTAATATGA 930 0.4366 MASVIMLPYGDVDSTLRAIAGRAEGFGRLAIGGLHGPLYLVTSLADDGPGSLREGCRRKEPLWIVFEVSDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCHFAQHDKTMLIGADPSHVDDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADREEQKSGMTISEGDMLLNGAQPCLSTEYKEESMFHPSEYYPTWTMEAATHSLREANSRVTCVRTTYSFVGRGRNVLGHEIGIVAVKPERPNIASYHCFFVTDLI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01735 309 Gene3D - 69 262 IPR012334 -
Car04g01735 309 PANTHER PECTATE LYASE 5 69 - -
Car04g01735 309 PANTHER PECTATE LYASE 18-RELATED 70 267 IPR045032 GO:0030570
Car04g01735 309 SMART amb_all 2 193 IPR002022 -
Car04g01735 309 PANTHER PECTATE LYASE 70 267 - -
Car04g01735 309 Gene3D - 9 68 IPR012334 -
Car04g01735 309 PANTHER PECTATE LYASE 18-RELATED 5 69 IPR045032 GO:0030570
Car04g01735 309 SUPERFAMILY Pectin lyase-like 20 231 IPR011050 -
Car04g01735 309 Pfam Pectate lyase 69 186 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01735 Car-Chr4 17876769 17879327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01735 70 259 Polysaccharide Lyase AT3G55140 78.947 1.44e-115 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01735 K01728 - gmx:100802068 423.32